Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00244 ATGGTTAGTGCAATAAAAGCAGCCACTGGAGATTTGGTGCTGACTTTCTTGTGGGTCTTCTTTTCCTCCATGTTGGGGTTGGCCACCGATGTCATAACAAAAGCGCTTGAAATTCATCATGCGTCCTACAATGGTTTTCATTACGCTGACGTTGTTGTCATCACTTCGCTCATCTTTATCCTCGTTACCATCTTCACCTTCATTGCCGATGCCTTGGGCGGTGCCAGCTTCAACCCCACCGGTAATGCTTCACTCTACGCCGCTGGTGTTGGTGATGACACCCTTTTCTCAATGGCTCTCCGGTTCCCTGCTCAGTATTGTAGGAAATTATGGACAAATCTGGTGGATGAAGTTACAATAGGGACTGGCCTCAAAAACTTTAATGGCCCTGTACTGGGTTCAGTGGGTGGTGTTCTGGCTGTTATGGAGTATATGCCAGAGAAATATAGGCACTTCATTGCTGGGCCTTCTTTGAAGGTTAGCTTGCATACTGGAGCTCTAGCAGAAGGGGTGCTGACATTTGTGATCACATTTCTTGTTCTCCTCATCATGATCAGGGGTCCTCACAGTGGCACCGCAAAGACTTTGTTGCTGGCAATCTCGACTGTGGTTTTGATCACTGTTGGTGCTAGTTACACTGGACCAGCTATGAACCCTGCCTTTGCATTTGGTTGGGCATACTTTGAGAAATGGCACGACAAATGGGACCACTTCTATGTATACTGGATCTGCCCATTCGTTGGATCAATACTAGCCGCATGGCTGTTCCGTATTGTCTTTCCCCCACCACCACCAGTAGAAAAACAGAAGAAAGCCTGA 819 0.4737 MVSAIKAATGDLVLTFLWVFFSSMLGLATDVITKALEIHHASYNGFHYADVVVITSLIFILVTIFTFIADALGGASFNPTGNASLYAAGVGDDTLFSMALRFPAQYCRKLWTNLVDEVTIGTGLKNFNGPVLGSVGGVLAVMEYMPEKYRHFIAGPSLKVSLHTGALAEGVLTFVITFLVLLIMIRGPHSGTAKTLLLAISTVVLITVGASYTGPAMNPAFAFGWAYFEKWHDKWDHFYVYWICPFVGSILAAWLFRIVFPPPPPVEKQKKA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00244 272 Gene3D Glycerol uptake facilitator protein. 1 266 IPR023271 -
Vimu8g00244 272 Pfam Major intrinsic protein 128 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 PANTHER AQUAPORIN SIP1-1 129 272 IPR044222 GO:0015250
Vimu8g00244 272 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00244 272 SUPERFAMILY Aquaporin-like 3 267 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00244 Vimu-Chr8 7150301 7154474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00244 2 271 Major Intrinsic Protein MIP AT5G18290 46.863 1.22e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00244 K09875 - gmx:100803227 377.867