Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00227 ATGTTGGTGATGGAAACAGAACCTGTTGTGGTTAACAAAGGAGATGAGGCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACATGTTACCTCACAGAGAAAGTGCTGGATAGAGACTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGCCAAAGGGATAGGAAGTATCCAACAGGGTTGAGAACTAATAGAGCAACACAATCTGGGTATTGGAAGGCCACTGGGAAGGACAAAGAGATTTTCAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGAAGAGCCCCAAAGGGAGAGAAAACAAATTGGGTTATGCACGAATTCAGATTGGAAGGAAAATTCGCATGCTACAACCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCAACACTGACGTTAACAAAAGGGTACTCCCAATTAACCCTGGCATTGGCCTTCTGAGAATGAACTCAATAGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTTGTGGATCCTCTCTTTGACCAAACCTCACACAACAAACACATTGACAATGATTTCAAGGGTACTACTAATAGTACTAACACTCACACACCTTCATCAGCTTCATCATCAGCAGCGGCTGAACCACCCTATTACCTTCCCAATTTCGTCAACAACAATCATCACATGCAGATGATGATGATGATGAAGCCTGAACAACACAGAATCTGTGAGACACCTCTCACCAACGTTAACTATGCCTCCACCAGCCAAGGGAATTTCAACTCTAACAACAACCCAATGGGAATTGGCACAAGCACTCATAATCCCCTTCAAAACACAATCTCACCCTTCAACATGTTCCAAGATTACTATATTCACCATGGAAAAAACAGTTTCCAGCAGTGCAAGAAGGAGCAATTCTCCAACACTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAACGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTATTGA 1209 0.4442 MLVMETEPVVVNKGDEALDLPPGFRFHPTDEEIITCYLTEKVLDRDFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGLRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKDEWVVCKVFHKSNTDVNKRVLPINPGIGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHNKHIDNDFKGTTNSTNTHTPSSASSSAAAEPPYYLPNFVNNNHHMQMMMMMKPEQHRICETPLTNVNYASTSQGNFNSNNNPMGIGTSTHNPLQNTISPFNMFQDYYIHHGKNSFQQCKKEQFSNTVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00227 402 MobiDBLite consensus disorder prediction 223 246 - -
Vimu8g00227 402 ProSiteProfiles NAC domain profile. 20 171 IPR003441 GO:0003677|GO:0006355
Vimu8g00227 402 FunFam NAC domain-containing protein 100-like 29 175 - -
Vimu8g00227 402 Gene3D NAC domain 29 176 IPR036093 GO:0003677|GO:0006355
Vimu8g00227 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 294 - -
Vimu8g00227 402 MobiDBLite consensus disorder prediction 226 246 - -
Vimu8g00227 402 SUPERFAMILY NAC domain 16 171 IPR036093 GO:0003677|GO:0006355
Vimu8g00227 402 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00227 Vimu-Chr8 6818808 6822013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00227 1 213 NAC Transcription Factor Family AT5G18270 73.148 4.96e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g00227 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00227 - - gmx:100813376 578.556