Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00225 ATGTACTATCAGCAGCAGCAGCAGCAGATAGCAGCAAGAAACTTGCATGCTTTAAGGATGCACAGCCACACTGAGAGGCATATGATGATGCAAGGAGGCAATGGGGCTTGTGATTCAGGACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAGCTACAGGTTCTGTGGCCTCAGCAAACACAAGATGGCCAAGCCACTGAGTGTTCAATGGGGAGTTTCTTAACCTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTTCAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCATTTGAAGCCTGATCTCACATTGAGTGAAGATGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTTTTACAAGAAGGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTCTAGAAGATGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGGTGGAAGGTAAGAGACAGCACTGAAACTGGGAGAATGGCAGTTAAATTGAACAATGAGAAGATTTCTCCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1086 0.4208 MYYQQQQQQIAARNLHALRMHSHTERHMMMQGGNGACDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQDGQATECSMGSFLTYSEESQRDRETHNMSLNLIAFNGPPFSVSKDCVEESMHLKPDLTLSEDVKQNMMFLSSSSDGKVVKGDFLQEGPSSLLSMNVGVLEDEKFGRTTLSKEEGWKVRDSTETGRMAVKLNNEKISPDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00225 361 Pfam Myb-like DNA-binding domain 50 99 IPR001005 -
Vimu8g00225 361 FunFam Two-component response regulator 44 107 - -
Vimu8g00225 361 SUPERFAMILY Homeodomain-like 47 105 IPR009057 -
Vimu8g00225 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 22 98 IPR044848 GO:0003700
Vimu8g00225 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 99 IPR006447 GO:0003677
Vimu8g00225 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Vimu8g00225 361 Pfam MYB-CC type transfactor, LHEQLE motif 93 138 IPR025756 -
Vimu8g00225 361 Gene3D - 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00225 Vimu-Chr8 6775605 6778083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00225 97 360 G2-like Transcription Factor Family AT3G04030 45.588 2.73e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu8g00225 Myb_DNA-binding 7.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00225 - - gmx:100786282 587.8