Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00220 ATGGAGAATAATGACATGGAAGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAACCCAATTAGAGATACTGAGAACATATGCCCATTTTGCGAGACAGAGGTTTCTGAGGTAATGGAGAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGGATTGCTCCACATGGGGGAAGCAGCTCAAGGGGGGAGGAAGAAGAGGTCGAGCAGCAGATGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTTTTCAGAGGACTTCATGTTAGGATGGTGTCTGAGTCTGAAAACCTTGAAGACAATAGGAACATGGATGGCAGCAGCATACTTGTGATTGATCCATTCAATGAAGGTGCACTGATTGTGAGAGGCCCTAACATGAACCACACAAGTAGTCCAAATGAGAACAATGCTGTTGGGAGCTCCCTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTTCAACACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGCGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGGTTGGAAGTGAAGCAAAGGAGATGCCATGCAAGCATATGTTCCATGATGATTGCATTGTCTCATGGCTCAAACTTCATGGTTCTTGTCCAGTATGCAGGTTTCAGATGCCATATGAGGATTCAAATGTTGAAGCCAATGTGGGCAATGGAACTGAAAATCAAAACATTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCATTCAGCAATTTTCTTCCTTCTCCCTGA 969 0.452 MENNDMEGVHWCNICSKMVNPIRDTENICPFCETEVSEVMENLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRGEEEEVEQQMENELVLGRRRRTSSYMMHLFRGLHVRMVSESENLEDNRNMDGSSILVIDPFNEGALIVRGPNMNHTSSPNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGSEAKEMPCKHMFHDDCIVSWLKLHGSCPVCRFQMPYEDSNVEANVGNGTENQNIELVRAGEERPRNGRRNWFPVLQSFSNFLPSP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00220 322 SMART ring_2 227 267 IPR001841 -
Vimu8g00220 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 274 IPR013083 -
Vimu8g00220 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 272 - -
Vimu8g00220 322 FunFam E3 ubiquitin-protein ligase RNF181 199 274 - -
Vimu8g00220 322 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Vimu8g00220 322 Pfam Ring finger domain 226 268 IPR001841 -
Vimu8g00220 322 SUPERFAMILY RING/U-box 217 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00220 Vimu-Chr8 6728195 6729163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00220 91 287 C3H Transcription Factor Family AT1G26800 30.808 1.24e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00220 - K11982 gmx:100790855 569.696