Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00201 ATGGCACTGAGAATCGCATCATCCTTGTCTTCCTCCAGGCCCACATGGATTTATGATGTCTTTCTAAGTTTTAGAGGTGAAGACACTCGTTTTCACTTTACTGATAATCTCTACCATTCCTTGTGCCAAAAGGGGATTCGTACTTTCATCGACCGGGAAGGTCTTAGAAAAGGCGAAGAGATTACGCCTGCTCTTTTTCACGCAATTCAAAATTCAAGGATTTCCATCGTTGTTTTCTCCAAAAACTATGCATCTTCAACCTATTGCTTAAATGAACTTGTAAAGATCCTTGAATGCGCAAAGAAAGAAGGTCGATCAATTTATCCTATATTTTATGGAGTGGATCCATCGGAAATTCGACATCAGACTGGAATTTATGCAGAAGCATTGTCAAAACACGAAGCTAAGTTCTACAATGACGCTGACAATGAGAAGGCACAAAAATGGAGGAAGGCCTTACGTGAAGCAGCTAATCTATCGGGCTGGCATTTCCAACATGGGTCTCAACAAGAATATGAGTTTATCAGTACGATTGTTGAAGAAATCTCTGAAAATATAAATTACATCCCTTTACATGTTGCTGATAATGCAATTGGGCTGGAGTATGCAGTGCAAGGAGTGAAATCTCTCCTTGGAGATGGGTCTGATGTCAACATGATAGGAATTTATGGTATCGGGGGTATAGGTAAAACCACGATTGCTCGTGCTGTGTATAACGCTATCTTTTGGCATTATCAAGGTTCTTGTTTTCTATCTGACATTAGAGAAAAGGCAATTAATAAACATGGGATTGTCCAACTCCAAGAAATACTACTTTCTGAAACATTCAAAGAAAGTATTAAAGTGGGAGATGTGAATAGAGCAATACCAATATTAAAAGGGAGACTTCAACATAAGAAGGTCCTTTTAGTTCTCGATGATGTTGACAAATTAGAGCAGTTAAAGGCACTTGCGGGGGGATATGATTGGTTTGGCTCTGGAAGTATAATCATCATCACCACAAGAGACAAGCACTTGCTAGATGCTCATGGGATAGTTAACTTATATGAGCTTTCGAATTGTTCAACTGGTAAAGTTGATCCATCTTATATGAACATTTCCAAGCGTGCAGTTTCTTATGCGTGTGGCCTTCCGTTGGCTTTGGAAGTTATAGGATCCCACTTATTTGGAAAAAACATAGATGAGTGTAGTTCTGCATTAGATAAATATGAAAGTATTCCTCATGAGAAAATTCATGAAATACTAAAAGTAAGCTATGATGGTTTGGAAGAAAATGAGAAAGGAATTTTCCTAGACATTGCTTGTTTCTTCAATACCTGGGAACTGGGTAATGTCAGACCAATGCTAAAAGCTCATGGTTTTCATGTAGAAGATGGTTTGAGAGTGTTGGTTGACAGATCTCTCATAAAGATTGATTATTCTGATTTTGTTAGAATGCATGACCTAATTCGAGACACAGGCAGAGAAATTGTAAGACAGGAATCAACAATTGAACCAGGCAGACGTAGTAGATTATGGTTTAACGAGGACATTGTTCATGTTCTGGAAGAAAATACGGGATCTGATAAAATAGAATTCATAAAGCTTGAAGGGTACAATAACGTACAAGTGCAATGGGATGGAAAAGCCTTCAAGGAAATGAAGAACTTGAGAATTTTGATTATTGAAGATTCAAGGTTTTCTACAGGCCTCAAGCATCTACCAAATAGCTTGCGAGTGCTAGACTGGAGTTGCTATCCTTCGCCATGTTTACCTCATGATTTCAATCCCAAACGTTTTGAGATACTCCTTCTGCCTGAAAGTTTCCTTCAGATGTTGAAACCACAAAAGGCATGTTTATCTCTCAAATTTTTTGGTCTAACCATGAGTTCTACATTAAAAGATAATAACTTGACCCATTCGGTTTTTATGTTGCAGATGTTGGAATCATTGTCTGTAATTAGCCTTCAAGATTGCAAGTTCTTAACTGATCTACCGAGTCTACGAGACGCACCATTCTTAACAACTCTGCGTCTCGATAATTGCTGTAATTTAGTTAACATTGATGAATCAATTGGGTTTCTTGATAAGCTTCGCTTCTTGAGTGCTAGCTATTGCACCAAGCTGAAAACTCTTGCACCCTGCATCATGTTGACATCTCTTGAAACTTTGGACCTTGGGAGGTGCTTTAGTCTTGAGAGCTTCCCAGAAGTATTGGGAAAGATGGAGAAAATAAGGACAATATATTTAGATTGTACAGGCATTGACAAATTGCCATTTTCAATTGGAAATTTTGTTTGGCTTGAGCTATTGTCGTTGACGGAATGCGAAAGGCTTCATCAGCTACCAGGTAGTATAAGCATAATGCCCAAAGTTAAAGTGCTAGTTGGTTATGGGCATGGAGCATATCAAATTTTTCAAGAGCAGTTGAGCTCAGAGGTGTCTCCAAGGGCAATGCTTATTGGTGATTCTGACCTATATCTTGATGTTTATTATTCATGCATAGGTCCCAATAATTCCATTCAACTATGCAGTCCTGATCCTCTTTTCCATTCTGATTTCAATTTGTTATTCCCAAAACTCGGAAGGGAAGAGGACTGGCTTTGTTTTCGCAGAGAATCATCTATGCATTTCTCCTTTCGAAACAAATTTCCTAAGATAGCGCTATGTTGTTCAATACTATTGCCTTTGTTGAAAATTATCATGGTATTGAATTTGAAGTTCAGAGTATTCATCAATGATACTCTACAATTCAGTGCTCTGTGCAACTTCATACTAAGAGAGTGGGACACAATACTCTGGTGTGATCTAGAAGGCAAAGTGGAGGGGGTGTTCTCAGATGAAGAGTGGAATAAAGCTGAGATTGTATTTGAGTTGGACTTCCCTATGCGAAGAAATAGTAGAAATGGGAACACAAGAAGGAGCATTGGTATAGGAAGTCTAGGTTGGAGCCTAATGGGTGTGTATGAGGAAGGAAATAATACAGAGGATATCGAATTCAAAGATCCCATGTCAGATAGGGAAAGTTGTACACACTGCATAGAGGATGACATATTATTACAAGTTTTTGGACATGTAATTTCGGCCGGCGGGATTGCTGTGGGTCCGGCCAAAGTACGAGCGGTCCTGGAATGGGAAACACCTCGTTCAGTTTCGGACGTTAGAAGTTTTGTTGGGTTGGCTGGCTACTATCGAAGGTTTATTGAAGGATTTTCTAAGATAGTAGCACCCTTAACTCAGTTGACCCGAAAAGATCAACCGTTCGTCTGGACCGACCGGTGTGAGTCCAGTTTTCAGGAATTGAAACAGCGATTGACGAAAGCTCCAGTCTTGGTCATTCCGGACGTTAACCAGCCCTTTGTCGTGTTCTGTGATGCATCATATCAAGGTTTGGGTTGTGTCTTGATGCAAGAAGAGAAGGTTGTTGCTTATGCCTCTCGTCAATTGAAAGTTCACGAGAGGAATTACCCAACTCATGATCTTGAATTGGCGGCTGTAGTGTTTGCACTAAAGATTTGGAGGCATTACTTATATGGTGCTAAGTTTCAAGTGTTTAGCGACCATAAGAGCCTCAAATATTTGTTTGATCAAAAGGAGTTGAATATGAGGCAGAGAAGATGGATGGAATTTTTGAAAGATTACGATTTTGAACTGCAATATCATCCTGGAAAAGCAAATGTGGTGGCGGACGCTTTGAGTAGGAAGACCGTGCATATATCTGCAATGATGATCAGAGTGGTAGAGAGCTTTCGGGATTTGAAGTTCCAAAGTGAACTAGAACCAAGCGGGGATAAGAGAATAAAAGAGAAACAATTACTGGATGAAGAGTTGCAAAAGGTAAGCAAGCCGACCGGTTTTCAATTGCATAAAGATTTTAGTTTCGGCACAGACGGTCTTCTAAGGTACCGGGGTAGAACGTGCGTTCCGAACGATGAAGTTTTAAGAAGATTAGTTCTTGAAGAAGCTCACCAGAGTCGCTTAAGTATACACCCCGGTATGACCAAAATGTACAATGACCTTAAAATGTCTTTTTGGTGGCCGGGAATGAAGAATGACGTCGCCCGATTTATCGCTTCGTGTTTAACCTGCCAACGAGCCAAAGCAGAACATCAAAAACCGAGCGGACTTAATAATATGTCTTAA 4122 0.3981 MALRIASSLSSSRPTWIYDVFLSFRGEDTRFHFTDNLYHSLCQKGIRTFIDREGLRKGEEITPALFHAIQNSRISIVVFSKNYASSTYCLNELVKILECAKKEGRSIYPIFYGVDPSEIRHQTGIYAEALSKHEAKFYNDADNEKAQKWRKALREAANLSGWHFQHGSQQEYEFISTIVEEISENINYIPLHVADNAIGLEYAVQGVKSLLGDGSDVNMIGIYGIGGIGKTTIARAVYNAIFWHYQGSCFLSDIREKAINKHGIVQLQEILLSETFKESIKVGDVNRAIPILKGRLQHKKVLLVLDDVDKLEQLKALAGGYDWFGSGSIIIITTRDKHLLDAHGIVNLYELSNCSTGKVDPSYMNISKRAVSYACGLPLALEVIGSHLFGKNIDECSSALDKYESIPHEKIHEILKVSYDGLEENEKGIFLDIACFFNTWELGNVRPMLKAHGFHVEDGLRVLVDRSLIKIDYSDFVRMHDLIRDTGREIVRQESTIEPGRRSRLWFNEDIVHVLEENTGSDKIEFIKLEGYNNVQVQWDGKAFKEMKNLRILIIEDSRFSTGLKHLPNSLRVLDWSCYPSPCLPHDFNPKRFEILLLPESFLQMLKPQKACLSLKFFGLTMSSTLKDNNLTHSVFMLQMLESLSVISLQDCKFLTDLPSLRDAPFLTTLRLDNCCNLVNIDESIGFLDKLRFLSASYCTKLKTLAPCIMLTSLETLDLGRCFSLESFPEVLGKMEKIRTIYLDCTGIDKLPFSIGNFVWLELLSLTECERLHQLPGSISIMPKVKVLVGYGHGAYQIFQEQLSSEVSPRAMLIGDSDLYLDVYYSCIGPNNSIQLCSPDPLFHSDFNLLFPKLGREEDWLCFRRESSMHFSFRNKFPKIALCCSILLPLLKIIMVLNLKFRVFINDTLQFSALCNFILREWDTILWCDLEGKVEGVFSDEEWNKAEIVFELDFPMRRNSRNGNTRRSIGIGSLGWSLMGVYEEGNNTEDIEFKDPMSDRESCTHCIEDDILLQVFGHVISAGGIAVGPAKVRAVLEWETPRSVSDVRSFVGLAGYYRRFIEGFSKIVAPLTQLTRKDQPFVWTDRCESSFQELKQRLTKAPVLVIPDVNQPFVVFCDASYQGLGCVLMQEEKVVAYASRQLKVHERNYPTHDLELAAVVFALKIWRHYLYGAKFQVFSDHKSLKYLFDQKELNMRQRRWMEFLKDYDFELQYHPGKANVVADALSRKTVHISAMMIRVVESFRDLKFQSELEPSGDKRIKEKQLLDEELQKVSKPTGFQLHKDFSFGTDGLLRYRGRTCVPNDEVLRRLVLEEAHQSRLSIHPGMTKMYNDLKMSFWWPGMKNDVARFIASCLTCQRAKAEHQKPSGLNNMS 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00201 1373 SUPERFAMILY DNA/RNA polymerases 1015 1213 IPR043502 -
Vimu8g00201 1373 Pfam RNase H-like domain found in reverse transcriptase 1108 1207 IPR041373 -
Vimu8g00201 1373 Gene3D - 347 423 IPR042197 -
Vimu8g00201 1373 PRINTS Disease resistance protein signature 709 725 - -
Vimu8g00201 1373 PRINTS Disease resistance protein signature 219 234 - -
Vimu8g00201 1373 PRINTS Disease resistance protein signature 374 388 - -
Vimu8g00201 1373 PRINTS Disease resistance protein signature 295 309 - -
Vimu8g00201 1373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 792 IPR044974 GO:0006952
Vimu8g00201 1373 Gene3D - 1113 1178 - -
Vimu8g00201 1373 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like protein 1112 1178 - -
Vimu8g00201 1373 FunFam Polyprotein of retroviral origin, putative 1030 1119 - -
Vimu8g00201 1373 CDD RNase_HI_RT_Ty3 1114 1228 - -
Vimu8g00201 1373 SMART till_3 17 159 IPR000157 GO:0007165
Vimu8g00201 1373 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vimu8g00201 1373 Pfam Integrase zinc binding domain 1304 1361 IPR041588 -
Vimu8g00201 1373 ProSiteProfiles TIR domain profile. 16 190 IPR000157 GO:0007165
Vimu8g00201 1373 Gene3D - 1030 1112 IPR043128 -
Vimu8g00201 1373 Pfam TIR domain 18 186 IPR000157 GO:0007165
Vimu8g00201 1373 SUPERFAMILY L domain-like 478 790 - -
Vimu8g00201 1373 Gene3D - 10 186 IPR035897 -
Vimu8g00201 1373 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Vimu8g00201 1373 Pfam NB-ARC domain 202 404 IPR002182 GO:0043531
Vimu8g00201 1373 Gene3D - 187 346 IPR027417 -
Vimu8g00201 1373 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 1287 1359 - -
Vimu8g00201 1373 Gene3D - 1267 1360 - -
Vimu8g00201 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 433 IPR027417 -
Vimu8g00201 1373 Gene3D Ribonuclease Inhibitor 507 805 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00201 Vimu-Chr8 6426257 6431354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00201 18 788 WRKY Transcription Factor Family AT4G12020 32.834 6.94e-88 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00201 - - gmx:100797941 1271.14