Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00199 ATGCTAAAAGCACCTCTCTGTTATGTGACCCTAAAATCCCCACAGTTTGCAGCCATGGCGGGAGCTACAGGAAGAACCCTCTTCACCTTCTCCCTTTCTTCCTCTTCTTCTTATTCTCCCTTCACGCGCTTCCTCGCCAAGCGCGTCCCACTACGCAAACCCCTCCCTCTTCTCCCCCGCTTCCGCCCACTCTGCTCCGTCGCTGCTGCGCCGGAAACCGCCGACGCGAAGCATTCTTTACTGCTCGAGAGGCTCCGGGCGCGGCACCTCAGGGATGCCGCGAGAATCGCCCCCGAACCGAGGAAGAAGGCCAGGGGCGCCGCCGTTGCGGAGGCTGAGAAAGAGAGGGCTAAGAAGGAGAAGAAGGTGGTTGCCAGTTTCGAGGGGTTGGGAGTGAGTGAAGAAGTTATGGCGGCGGTTAGTGAAATGGGGATTGATGTACCCACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGTTGCTACGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCGCGAGCTGTTGTATTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTAGCAAAATCAATAAGCCATCATGCCCGATTTAGGTGTACCATGGTAAGTGGTGGTGGACGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGGTTCTTCAGCATATTGAGGAGGGAAACATGGTGTATGGTGACATCAAATACTTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGAAATACGCAAGTTTCTAGGCCCATTAAAAAATCGTGCTTCAAAACCTGATGGCCTTGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTTCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAGACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTAGTGCAGGTACTAGAACCAAGCCTTGCAAAGGGTAACAGGGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGTGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCGACGTTAGTTTGCTCGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTGATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAAGAAGCAATAAGGAACAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGAAGGGACACTGCAAGGACCCAAATCACAGAGCAGAAGGGAAAGGGTAGAAAAATGATTCAAGTTTCAAAAGTCAAGGGCAAATTTGGTAGTCGTTCCAGTTCTGGAAATAATGGATCAGGTCTAAAATCTGGCAAAGCTTCACCTGTCAAATCTATGAAAAAAGGGATTACCGTTTCAAAATCTGGGAAATCTTCTAGGGCAAGTAGCACCATCAGAAAAGGTTCTTCAGATAAGAGGCAAACAGGTAAAGTGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTCGGGGAAAAAAATCATCTTCAAATAACAATGGTTCGGTTTTGTGA 1899 0.4681 MLKAPLCYVTLKSPQFAAMAGATGRTLFTFSLSSSSSYSPFTRFLAKRVPLRKPLPLLPRFRPLCSVAAAPETADAKHSLLLERLRARHLRDAARIAPEPRKKARGAAVAEAEKERAKKEKKVVASFEGLGVSEEVMAAVSEMGIDVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPEIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIRLSGSENKLEALVQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCSDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRNNESLEAITKESVRRDTARTQITEQKGKGRKMIQVSKVKGKFGSRSSSGNNGSGLKSGKASPVKSMKKGITVSKSGKSSRASSTIRKGSSDKRQTGKVVSATKSTNSKLNVVGFRGKKSSSNNNGSVL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00199 632 CDD SF2_C_DEAD 356 488 - -
Vimu8g00199 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 490 IPR027417 -
Vimu8g00199 632 Gene3D - 92 344 IPR027417 -
Vimu8g00199 632 Pfam Helicase conserved C-terminal domain 368 479 IPR001650 -
Vimu8g00199 632 SMART ultradead3 144 353 IPR014001 -
Vimu8g00199 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Vimu8g00199 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 80 516 - -
Vimu8g00199 632 MobiDBLite consensus disorder prediction 575 589 - -
Vimu8g00199 632 CDD DEADc 136 335 - -
Vimu8g00199 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 518 IPR001650 -
Vimu8g00199 632 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
Vimu8g00199 632 MobiDBLite consensus disorder prediction 514 530 - -
Vimu8g00199 632 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vimu8g00199 632 MobiDBLite consensus disorder prediction 598 632 - -
Vimu8g00199 632 MobiDBLite consensus disorder prediction 514 632 - -
Vimu8g00199 632 Gene3D - 349 558 IPR027417 -
Vimu8g00199 632 SMART helicmild6 397 479 IPR001650 -
Vimu8g00199 632 MobiDBLite consensus disorder prediction 544 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00199 Vimu-Chr8 6387961 6395324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00199 124 501 Eukaryotic Initiation Factors Gene Family AT3G19760 27.487 1.67e-40 150