Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00192 ATGTCAAGAAGAGGCAGAGTGCTTCTTAGCCTCTCTTTTTCTTTGCTCTCACATGTAAAGCACGACCCTTTATCAAAATCAACACCACTCACTTCTTTATTACGAAGTAGCATCACATTCTCAACTTCTTCATCCTCCATAACCCCTCCTATTGAAGAATCAAAGACTTCATCTTCCAAGTCCCAAAGGGATTCACTGATTTTGGAACAGTTCAAGCAAAGAAAACTCAAAGGGTTCCCAAAAGACTCCAAGGGTACCCCTCAAGTGGGTTCAACTTCAGTTCCGTTAAGTTCAGATGCTTATACTGAGAAGGTGGTCCAAAAGGGTGTGCAGAATGAGGATGAACCCACCATGGTTGTTAGAAGCTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTAATGGAGGAGATTGGAGGGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATTTTGGAAGGGAAGAGTTTGTTGCTGAGCTCACCATCCGAACCTGACAGAACTTTGGCCTTCTTGTTGCCCCTTATTCAGTTGCTAAGACGGGATGGAGAGTTGCTTGGTTCAAATTCAAAACATCCACAAGCCATCGTGCTTTGTGCTACGGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCAAAATATATCATCCATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATAATGGGCAGTCACAAGCCTCAATTGGCCTAATGATAGGAACTCCTTGTGAGATTCTTCAATATATTGAAGAGGGGAGCATTGTTCCTTCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTGCTGCCAAAAGATTACAAACTGTTCTAGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCCCCTATTGTAAAGCATCTTGAGTGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAACAAACAGAAGTATTTCATTTCACAGAGTCTCTTCATGCTCTTCAGAAAAAGGTGACAGAGGCCATGGACTCCCTTTTGCAACAAGAATAA 1125 0.424 MSRRGRVLLSLSFSLLSHVKHDPLSKSTPLTSLLRSSITFSTSSSSITPPIEESKTSSSKSQRDSLILEQFKQRKLKGFPKDSKGTPQVGSTSVPLSSDAYTEKVVQKGVQNEDEPTMVVRSFKELGVSEELVEVMEEIGGFIPSEIQCVVIPAILEGKSLLLSSPSEPDRTLAFLLPLIQLLRRDGELLGSNSKHPQAIVLCATEEKAAQCFNAAKYIIHNTKLKSAKDCASPDNGQSQASIGLMIGTPCEILQYIEEGSIVPSEIRYLVLDEADCMLGSGLGPEIHKILRPLQDHESKSAAKRLQTVLAISTMAEVLGEQSPIVKHLECHHAGNISAMSLEMEQTEVFHFTESLHALQKKVTEAMDSLLQQE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00192 374 Gene3D - 96 320 IPR027417 -
Vimu8g00192 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 55 317 - -
Vimu8g00192 374 SMART poly_2 311 373 IPR002004 GO:0003723
Vimu8g00192 374 MobiDBLite consensus disorder prediction 41 64 - -
Vimu8g00192 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 317 IPR027417 -
Vimu8g00192 374 Gene3D - 321 373 - -
Vimu8g00192 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 259 374 IPR002004 GO:0003723
Vimu8g00192 374 SMART ultradead3 140 347 IPR014001 -
Vimu8g00192 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Vimu8g00192 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Vimu8g00192 374 SUPERFAMILY PABC (PABP) domain 315 369 IPR036053 GO:0003723
Vimu8g00192 374 Pfam DEAD/DEAH box helicase 146 313 IPR011545 GO:0003676|GO:0005524
Vimu8g00192 374 Pfam Poly-adenylate binding protein, unique domain 324 368 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00192 Vimu-Chr8 6255492 6258061 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00192 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 24.581 9.62e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00192 - - vra:106768009 633.254