Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00191 ATGTCTGATTCTGGTTGCTCGAGTTGGTTTTTGTTATTTATTTTCTACAGGTTTCGTGGACGCGAATTGGATGACGAAGTCACGACTGGTTTTGAGTGGAGAAGCAGTAGTGCGATTCGAAGGTTGGATGCGCGATTCTTAGTTCAGAGGAGGGTTTCTGATGAAGACATCAGTCGAAGAACACACAAGTACCACAACCAACCCTTACCCAAGATGTTGTGGGTAGACAAATATCGTCCCAAAACCCTCGACCATGTTATGGTCCACACCGATATCGCTCACAATCTCAAGAAATTGGTGAAGGAACAAGATTGCCCCCATTTACTCTTCTATGGCCCTTCTGGCTCTGGCAAGAAAACCCTAATCATGGCCGTTCTCCGCCAAATGTTTGGATCTGGTGCTGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCTGGAAGTAGATCTCTTGATATAGAGTTGACAACATTGTCAAGTGCCAACCACATTGAAATAAGTCCAAGTGATGCAGGATTTCAAGACAGATATGTTGTTCAAGAGGTAATCAAAGAAATGGCTAAGAATAGACCCATCGATACTAAGGGGAAGAAAGGATTTAAAGTACTCGTGCTCAACGATGTTGACAAACTCTCTAGAGAAGCTCAACATTCTCTTCGGAGAACAATGGAAAAATACAGTGCTTATTGTAGACTAATTCTATGCTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTAGATGTCTCAATGTAAGGATAAATGCTCCAAGTGAAGAACAGATTCTTGAAGTTTTAGAGTTCATTGGTAGGAAAGAAGAGCTGCAACTTCCTGCTGGTTTTGCTGCTCGCATTGCAGAGAAATCAAATAGGAATTTAAGGAGGGCAATATTGGCATTTGAGACTTGTCGTGTGCAACAGTATCCTTTCACTAACAAACAAACAATTCCTCCAATGGACTGGGAAGAACATATTTCTGAAATTGCATCTGACATAATGAAAGAACAGAGCCCCAAAAGGTTGTTTCTAGTTCGAGGGAAGCTTTATGACTTGCTAATAAATTGTATTCCTCCGGAGATGGTTTTGAAGAGGCTTCTTCATGAGCTATTGAGGAAGCTGGATGCAGAGCTAAAGCATGAAGTATGTCATTGGGCTGCATATTATGAACATCGGATGCGTCTTGGACAGAAGGCAATCTTTCACATCGAAGGTATTTTGACTGATAGATTGTGGTAG 1245 0.4185 MSDSGCSSWFLLFIFYRFRGRELDDEVTTGFEWRSSSAIRRLDARFLVQRRVSDEDISRRTHKYHNQPLPKMLWVDKYRPKTLDHVMVHTDIAHNLKKLVKEQDCPHLLFYGPSGSGKKTLIMAVLRQMFGSGAEKVKVENRTWKVDAGSRSLDIELTTLSSANHIEISPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQILEVLEFIGRKEELQLPAGFAARIAEKSNRNLRRAILAFETCRVQQYPFTNKQTIPPMDWEEHISEIASDIMKEQSPKRLFLVRGKLYDLLINCIPPEMVLKRLLHELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGILTDRLW 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00191 414 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 74 399 - -
Vimu8g00191 414 FunFam replication factor C subunit 3 261 319 - -
Vimu8g00191 414 CDD AAA 92 261 - -
Vimu8g00191 414 SMART AAA_5 104 263 IPR003593 GO:0016887
Vimu8g00191 414 Gene3D - 261 320 - -
Vimu8g00191 414 FunFam Replication factor C subunit 3 323 413 - -
Vimu8g00191 414 Pfam DNA polymerase III, delta subunit 90 259 - -
Vimu8g00191 414 Gene3D - 71 260 IPR027417 -
Vimu8g00191 414 SUPERFAMILY post-AAA+ oligomerization domain-like 322 411 IPR008921 GO:0003677|GO:0006260
Vimu8g00191 414 Gene3D - 323 413 - -
Vimu8g00191 414 FunFam Replication factor C subunit 5 71 260 - -
Vimu8g00191 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 311 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00191 Vimu-Chr8 6230177 6239031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00191 72 410 Core DNA Replication Machinery Family AT5G27740 80.826 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00191 K10756 - gmx:100818329 626.706