Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00186 ATGGCGGCGATTTCTGCTCCTATGGCGGTTCCAGCCACAGCGTTGAATGGTGCGCAATACGGAAATGCCTCTCTGTATGTTGGGGATCTCGATGTCAATGTGATAGAGAGTCAGTTGTTTGATCTGTTCAGCCAAGTGGCTCGAGTGGTTTCGATTAGGGTTTGCAGGGATCAGACTAAGCGATCCTCCCTCGGCTATGCTTATGTCAATTTCCCCAATAATCAAGATGCTGCTATTGCCATGGAACATTTGAACTTCACTCCTCTGAATGGAAAACCCATTCGGATTATGTTTTCTCACCGTGATCCCAGCATCAGGAAAAGTGGATTTGCAAATGTGTTCATTAAGAATCTTGATGCATCGGTAGATAACAAGGCACTGTATGACACTTTTGTTGCCTTTGGAACTGTGCTATCTAGTAAGGTAGCAGTTGATGAGAATGGTCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAATGACGAGTCTGCCCAGAATGCTATCAAAAAATTGAACGGCATGTTAATAAATGATAAGAAGGTCTATGTTGGGCTTTTTGTTCGGCGTCAGGAAAGGGCTCCAGGGAATGATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCTGAAACATACACTGATGAAGACCTTAAGCAACTCTTCAATACCTATGGTACCATAACCAGTGCTGTGGTCATGAAAGACGAAGAGGGAAACTCCAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCCGCTACTGCTGTTGAAAAGTTAAATGGAACAACCCTAAGCGATGACAAGGTTCTATATGTAGGGAAGGCTCAGAGGAAGGCAGAAAGAGAGGCAGGATTGAAAGCTAAATTTGAACAGGAAAAAAGAAATAAATTTGATAAACTTCAAGGTGCTAACTTGTATCTGAAAAACTTTGATGACAGTTTTAATGATGAAAAATTGAAAGAGCTTTTTTCTAAGTTTGGAACAACAACATCTTGCAAGGTAATGCTTGACGCTCTTGGTCGTAGCAAAGGTTGTGGTTTTGTTGCATTCTCTACTCCGGAGGAAGCCGCTAGAGCCTTGAAGGAAATGAATGGGAAGATGATTGGAGAAAAGCCTCTGTATGTTGCAGTAGCCCAGCGAAAGGAAGAAAGGAAGGCTAATTTACAGGCCAAGTTTTCACATATGCAAATTGCTGCTGGCCTTACTGGATATCATCCAGCTTATTTTGGTCCAGGAGCACCTGGGTTTGTCTCACCTCAGGCAAGCTTTGGTTTTCAACCTCATGTCTTGCCTCAAAGCATGCGTGGGGTTGCTCCAAATTTCATTATGCCATACCACCTTCAGAGACAGGGTTCTCCTGGACAAAGGATGGGTCCTACTACAGGAAGGGTGGGAAATAACCAGGTAACTCTCAACCATTCACTTCCAATACCACCAACTGGTCCAAATGGCTTACATAAGTATGTTGTGCCCTATAATCTGGTGGGTCCATCTGACATTTCTGCATCTCCTCTTGATGACATCCTTGATGCCAACAAGACTTCTGGTATATCATCCACTACACTTGCTTCGGCTTTGGCTTCTGCTAGTCCGGAGAATCAACATAGGATGCTGGGTGAAAATTTATATCCACTGGTGGAACGTCTTACTCCAAGTAATCAGACTGCAAAAGTCACAGGAATGTTGCTGGAAATGGATCAATCTGAAGTGATTCATCTTATTGAATCTCCAGAGGATTTGAAGACAAAGGTGTTCGAGGCAATGAAGGTGCTTCATGATGCAGTAGCAGGTTCTGAAGAAGTTGGTGATCAACAAAACCATCGCGTGGTACAAAACAACATTCATCTTCTCACATTGAGACTCAACGGCAAGACTCCTCAACGACTAAGCTCATCCACGACGACTCCACAACAAGGAGTCTCCACAGCTGCGAAGGTCATCCATACGATTGAGAATTCTAGTTGGATTGGAATTTTTGCGGATCGGAGTTTTTACGGCAGGCGTGGGAATATGATGGAAAAGATAAAAGTTGATGATGATGAAGAAGAAGAAAACATAGGCGTGAGCTAG 2082 0.4308 MAAISAPMAVPATALNGAQYGNASLYVGDLDVNVIESQLFDLFSQVARVVSIRVCRDQTKRSSLGYAYVNFPNNQDAAIAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDASVDNKALYDTFVAFGTVLSSKVAVDENGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRRQERAPGNDGSPKFTNVYVKNFSETYTDEDLKQLFNTYGTITSAVVMKDEEGNSRCFGFVNFESPDSAATAVEKLNGTTLSDDKVLYVGKAQRKAEREAGLKAKFEQEKRNKFDKLQGANLYLKNFDDSFNDEKLKELFSKFGTTTSCKVMLDALGRSKGCGFVAFSTPEEAARALKEMNGKMIGEKPLYVAVAQRKEERKANLQAKFSHMQIAAGLTGYHPAYFGPGAPGFVSPQASFGFQPHVLPQSMRGVAPNFIMPYHLQRQGSPGQRMGPTTGRVGNNQVTLNHSLPIPPTGPNGLHKYVVPYNLVGPSDISASPLDDILDANKTSGISSTTLASALASASPENQHRMLGENLYPLVERLTPSNQTAKVTGMLLEMDQSEVIHLIESPEDLKTKVFEAMKVLHDAVAGSEEVGDQQNHRVVQNNIHLLTLRLNGKTPQRLSSSTTTPQQGVSTAAKVIHTIENSSWIGIFADRSFYGRRGNMMEKIKVDDDEEEENIGVS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00186 693 FunFam Polyadenylate-binding protein 290 395 - -
Vimu8g00186 693 SUPERFAMILY RNA-binding domain, RBD 23 191 IPR035979 GO:0003676
Vimu8g00186 693 Gene3D - 15 111 IPR012677 -
Vimu8g00186 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Vimu8g00186 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Vimu8g00186 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Vimu8g00186 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Vimu8g00186 693 FunFam Polyadenylate-binding protein 518 600 - -
Vimu8g00186 693 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 522 600 IPR002004 GO:0003723
Vimu8g00186 693 SUPERFAMILY PABC (PABP) domain 448 608 IPR036053 GO:0003723
Vimu8g00186 693 SMART rrm2_1 24 97 IPR003954 GO:0003676
Vimu8g00186 693 SMART rrm2_1 204 276 IPR003954 GO:0003676
Vimu8g00186 693 SMART rrm2_1 308 380 IPR003954 GO:0003676
Vimu8g00186 693 SMART rrm2_1 112 184 IPR003954 GO:0003676
Vimu8g00186 693 FunFam Polyadenylate-binding protein 194 289 - -
Vimu8g00186 693 CDD RRM2_I_PABPs 109 184 IPR045305 -
Vimu8g00186 693 Gene3D - 519 599 - -
Vimu8g00186 693 CDD RRM4_I_PABPs 306 384 - -
Vimu8g00186 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Vimu8g00186 693 Gene3D - 112 185 IPR012677 -
Vimu8g00186 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Vimu8g00186 693 SMART poly_2 534 598 IPR002004 GO:0003723
Vimu8g00186 693 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 23 595 IPR006515 GO:0003723
Vimu8g00186 693 SUPERFAMILY RNA-binding domain, RBD 202 388 IPR035979 GO:0003676
Vimu8g00186 693 SMART rrm1_1 204 277 IPR000504 GO:0003723
Vimu8g00186 693 SMART rrm1_1 24 97 IPR000504 GO:0003723
Vimu8g00186 693 SMART rrm1_1 308 380 IPR000504 GO:0003723
Vimu8g00186 693 SMART rrm1_1 112 184 IPR000504 GO:0003723
Vimu8g00186 693 Pfam Poly-adenylate binding protein, unique domain 530 595 IPR002004 GO:0003723
Vimu8g00186 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Vimu8g00186 693 PANTHER RNA BINDING PROTEIN 23 85 - -
Vimu8g00186 693 CDD RRM3_I_PABPs 202 282 - -
Vimu8g00186 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Vimu8g00186 693 Gene3D - 187 291 IPR012677 -
Vimu8g00186 693 Gene3D - 292 396 IPR012677 -
Vimu8g00186 693 FunFam Polyadenylate-binding protein 109 192 - -
Vimu8g00186 693 FunFam Polyadenylate-binding protein 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00186 Vimu-Chr8 6189981 6194097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00186 4 599 Eukaryotic Initiation Factors Gene Family AT1G22760 54.459 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00186 K13126 - gmx:100783163 809.675