Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00162 ATGGTGGCAGTGTCATCCATCGCCGCCGGTATACAATTTGGATGGGCTCTACAACTCTCCCTCCTCACACCATATGTACAAACCTTAGGAGTTCCACACGTTTGGGCTTCCTTCATATGGCTTTGTGGCCCCATCTCTGGCCTCCTAGTTCAGCCTATTGTAGGCTACAGCAGTGACCATTGCCAATCTTCCTTTGGTCGTCGCCGTCCATTTATCCTCGCCGGCGCAATAGCTGTCGCAGTCGCCATTATCCTTATTGGCTATGCTTCCGATATAGGACACATGGCCGGCGATGACATAACAAAGAAAACCCGTCCACGAGCCGTTGCCATCTTCGTCATCGGCTTTTGGATCTTAGATGTTGCCAACAACATGCTCCAGGGACCATGTCGTGCCTTCCTTGGTGACTTAGCTGCCGGCGATCCAAAAAAAACGAGAACCGCCAACGCATTCTTCTCATTTTTCATGGCTGTGGGCAACGTCCTGGGCTATGCCGCAGGATCCTATAACGATCTCCACAAGATCTTCCCTTTCACTCAAACCGAGGCATGCAACATATTCTGTGCAAACCTAAAGAGTTGCTTCTTCTTCTCAATCGTTCTTCTTCTTGCTTTGTGCATTATCGTTCTCACTTGCGTGAACGACCCTAAGTTCACACCGGCACCTAAGGAGTCGAAGATAGAAGATGGGAAGACACAAGTTTCGTGCTTCTATGGAGAGTGTTGTGTTGCATTCAGAGAACTTGAGAAGCCAATGTGGATGTTGATGCTAGTGACAGCTATCACATGGATTGCGTGGTTCCCTTACGTGTTGTTCGATACTGACTGGATGGGTCGTGAGGTGTACGGTGGTGATGTGGGTCAGAAGGCATACGATAACGGTGTGCATGCTGGTTCTTTGGGGCTCATGTTGAATTCAGTGGTGTTGGCTGTAGCGTCTTTGGGTGTAGAACCAATGGGTCGCTTGGTTGGTGGAGTCAAGTGGTTGTGGGCAATCGTTAATGTTATTCTAGCAATTTGCTTAGCAGCGACCGTGCTCATCACAAGAGTCGCTGAGCGAGAACGTGCCAAAAACCCTGCTCTCATTGGAAACCCTTCCATGGATGTGAAAGTTGGATCCTTAGCATTCTTCTGCGTCCTTGGTATTCCACTTGCGGTTACATATAGTGTTCCCTTTGCTCTGGCCTCTATCTATTCTAACAGCTCAGGTGCAGGACAAGGATTATCTTTGGGTCTTCTGAATGTTTCAATTGTGATTCCTCAGATGATTATATCAGCAATTAGTGGACCATGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCATTCGTGTTGGGCGCCGCAGCGGCCGCCATAAGTGCTGTACTTGCAATTGTTATACTTCCAAACCCCAAAAAAGAAGATGAAGCCAAGATGTCCAGCCTCAACATGGGTAGTTTTCATTAA 1446 0.4834 MVAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHVWASFIWLCGPISGLLVQPIVGYSSDHCQSSFGRRRPFILAGAIAVAVAIILIGYASDIGHMAGDDITKKTRPRAVAIFVIGFWILDVANNMLQGPCRAFLGDLAAGDPKKTRTANAFFSFFMAVGNVLGYAAGSYNDLHKIFPFTQTEACNIFCANLKSCFFFSIVLLLALCIIVLTCVNDPKFTPAPKESKIEDGKTQVSCFYGECCVAFRELEKPMWMLMLVTAITWIAWFPYVLFDTDWMGREVYGGDVGQKAYDNGVHAGSLGLMLNSVVLAVASLGVEPMGRLVGGVKWLWAIVNVILAICLAATVLITRVAERERAKNPALIGNPSMDVKVGSLAFFCVLGIPLAVTYSVPFALASIYSNSSGAGQGLSLGLLNVSIVIPQMIISAISGPWDALFGGGNLPAFVLGAAAAAISAVLAIVILPNPKKEDEAKMSSLNMGSFH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00162 481 Gene3D MFS general substrate transporter like domains 1 222 IPR036259 -
Vimu8g00162 481 PANTHER SUGAR TRANSPORTER 1 459 - -
Vimu8g00162 481 CDD MFS_SLC45_SUC 1 446 - -
Vimu8g00162 481 Gene3D MFS general substrate transporter like domains 249 474 IPR036259 -
Vimu8g00162 481 NCBIfam sucrose/proton symporter 1 466 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vimu8g00162 481 FunFam Sucrose transport protein 1 461 - -
Vimu8g00162 481 SUPERFAMILY MFS general substrate transporter 4 468 IPR036259 -
Vimu8g00162 481 Pfam MFS/sugar transport protein 13 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00162 Vimu-Chr8 5721613 5723436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00162 1 481 Sucrose Transporter Gene Family AT1G22710 62.705 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00162 K15378 - gmx:100785899 770.385