Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00148 AGAGACGGAAGGACACTCTCAATATTGCAAACCAGCTTTCTTGCCTTTGCTACTTCCTTCAACTCAGCATTCAAAGAGAGAATTCCTTTCTCCTACTCAAAAATGGACGTGAGATTATCTTCTGCTCAGACTAAGAACTCTGAGGATGTTGTGGCCAATCCTGCAATTCAAATTGGGGGAACTGGAAAATCTTGTCATCAACATAGCAAAGATATATATGAAGATATGGGAACAGTGGAAGGCATAGAGGAGCTCAAGGCCTTGTTTTTGGCCATGTTTATAGGAAAGCCTTTTTTAATTTGCAGCACCATCCAAAGATCCATTGTTTTGCAAGAGTATACAAAGAAATCACAAAAATATCTTGTCTTGTACCAGGTCACAGGTATGGAGAAAATGCTGAAGAGGTCGCGCAGTTGGTTAATTGGACATGTCCGAGGTGTCGAGGCATTTGCAACTGTAGTCTTTGCCAGTGGAAAGCGACGAGGTGAACAGCCTACAGGTCCCCTTTATCGTAGTGCCAAGGAATCTGGCTTTAAGTCAGTTTTAGAAATGCTTTCTGTGAAGAAGAATTTAGAAACATCAAATCCGTTAAATGAAGGTAGTCTGGAAAAGGAGCCTGAAGTACTTCTCTCAGGGGAACTCGTAAATGAACATTTTTCAGATGGAAATGATGTCGCTGAAGTTTGCAACAAAGATGATGGTGGTGATAATGTTGGTGCCATGTTCCAAGGAGAGATAATTGCGGAGGAAATTCTTTTGCCACCTGGCATGGAGTTAAAAGAAATATTTGGCATCGAGTTACCACCCAAAGAGGTTGGGGATGCGTTGCAGATTTTAGAGTTTTGCAGAGTGTTTGGGAAGGCTCTTGATCTCAAGGAAGGAGAAGCTAAAGCCATTTTTGAAGAATTGATCAGTAGAGAAAGTATGGATGAACATAACTCCTCACTGATTCAATTTCACTGTAGATTGTTGGCATTGATCCTTGGTGATTCGAAAAAGGAGTCTCTATCCTTATCAACCAAGAATGAAACTAGTTCATGGTTGAAACATTTAGAAGATTTGATTATGCAATCATATCACCTTCTAAATGATTTCCCTTTGGATTGGTTTCAAGAAGGCATCAGCGGATACTATAAATTGGATTTGTCTAAGAAGTTTAAACTGATGACTTTTCTTTGTGACGAAGCTTTGAACACTAGAAAACTAAGGAGCTATATTCAGGATGAAAATGCAAGACATGGAAAAGTAGTGAAAGAAGAAAAACATAAGATTGCTGCCGCTAAGGAAAAGGAAAAGTGTCTTGCACAGTTGCAGAATGAGAGGGCCAAAGTGTCCTCCATTCCAATGGAGGAGGATGATGCTCTTATAAAGATAAGAACTGAGGTTGGCGAAGCACAGGCTGAGATGTTAAGGTTAAAAAGCACAAGTGAAAAATACAAAAGTGGATGTGATGCCACGAGAATCAATCCAGTGTTTGTGGATAACAATGGGATGACATTTTGGAAGGTACAAAGTTACAACGACGAATGTGTTCTGCTGCAAGATATGAAAATCCAAGATGAAACTGCTACTTTACGTGAAGAAAGCTGGTTTGTTTACAGTCTTACAGCGAAGGATAAGATTGATAAATATATATCTTCAAGACTGAGCAGGGCTAAAAGACTTAAGCGTCTCAATTCTCAAACAACTTTGTAG 1695 0.3965 RDGRTLSILQTSFLAFATSFNSAFKERIPFSYSKMDVRLSSAQTKNSEDVVANPAIQIGGTGKSCHQHSKDIYEDMGTVEGIEELKALFLAMFIGKPFLICSTIQRSIVLQEYTKKSQKYLVLYQVTGMEKMLKRSRSWLIGHVRGVEAFATVVFASGKRRGEQPTGPLYRSAKESGFKSVLEMLSVKKNLETSNPLNEGSLEKEPEVLLSGELVNEHFSDGNDVAEVCNKDDGGDNVGAMFQGEIIAEEILLPPGMELKEIFGIELPPKEVGDALQILEFCRVFGKALDLKEGEAKAIFEELISRESMDEHNSSLIQFHCRLLALILGDSKKESLSLSTKNETSSWLKHLEDLIMQSYHLLNDFPLDWFQEGISGYYKLDLSKKFKLMTFLCDEALNTRKLRSYIQDENARHGKVVKEEKHKIAAAKEKEKCLAQLQNERAKVSSIPMEEDDALIKIRTEVGEAQAEMLRLKSTSEKYKSGCDATRINPVFVDNNGMTFWKVQSYNDECVLLQDMKIQDETATLREESWFVYSLTAKDKIDKYISSRLSRAKRLKRLNSQTTL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00148 564 Pfam DDT domain 271 329 IPR018501 -
Vimu8g00148 564 ProSiteProfiles DDT domain profile. 269 333 IPR018501 -
Vimu8g00148 564 PANTHER OS05G0300700 PROTEIN 159 458 IPR040221 GO:0006355
Vimu8g00148 564 SMART testlast3 269 333 IPR018501 -
Vimu8g00148 564 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 376 406 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00148 Vimu-Chr8 5456606 5460942 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu8g00148 DDT 5.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00148 - - vun:114181676 551.206