Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00145 ATGATAGTCTTTGCAGCACCTGATCTTTTGCTCTTGTATTATGAAACAGGTGACGCCTTACATAACCTGAGGACAAATTTACAAGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAACGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGCCAGCTCAAAAACTTACAGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGATCTGGGAAATCTTACTAATTTAGTGAGCTTGGATTTGTATCTGAACCGCTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCTTACTGGTCCTATTCCCATGTCACTGACTAATGTCACTGCTTTGCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCACTATTTACTCCCATCAGTTTTACCAACAACTTGGACTTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCTCCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCGATATCAGGAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCAGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAAATTTTCTTTGATGTACCTGCTGAAGAAGATCCAGAAGTACACCTTGGGCAGCTCAAGAGGTTCTCACTCCGGGAATTGCAAGTTGCAACAGATACTTTTAGTAATAAAAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAACTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTCTACGTGGGTTCTGTATGACACCAACAGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCTTCATGCTTAAGAGGTATGGCCTTTCCTTTTTCCTCCAGTCTTTGGCCTAGCAACAAACGTCCAGCTCATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATAGCATTGGGATCATCAAGGGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATCCACCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGAGGCACAATTGGGCACATAGCCCCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACAGACGTATTTGGTTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGACTTGCGAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAGGAAAAGAAGCTAGAAATGCTCGTGGACCCTGATCTCCATAGCAATTACATAGATGCTGAGGTAGAACAGTTAATTCAGGTTGCACTGCTTTGCACGCAAGGTTTCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGACGGTGATGGTTTGGCTGAAAGATGGGATGAGTGGCAAAAGGTGGAGGTTCTGCGCCAGGAAGTGGATCTCACCCCTCATCCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTAA 1851 0.4468 MIVFAAPDLLLLYYETGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEIFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRGMAFPFSSSLWPSNKRPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCTQGFPMDRPKMSEVVRMLDGDGLAERWDEWQKVEVLRQEVDLTPHPNSDWIVDSTENLHAVELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00145 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vimu8g00145 616 Pfam Protein kinase domain 280 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00145 616 FunFam Somatic embryogenesis receptor-like kinase 1 356 587 - -
Vimu8g00145 616 ProSiteProfiles Protein kinase domain profile. 279 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00145 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 578 - -
Vimu8g00145 616 Pfam Leucine rich repeat N-terminal domain 17 53 IPR013210 -
Vimu8g00145 616 Gene3D Transferase(Phosphotransferase) domain 1 356 587 - -
Vimu8g00145 616 FunFam Somatic embryogenesis receptor kinase 1 13 191 - -
Vimu8g00145 616 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Vimu8g00145 616 FunFam Somatic embryogenesis receptor kinase 1 248 355 - -
Vimu8g00145 616 SMART serkin_6 279 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00145 616 SUPERFAMILY L domain-like 17 172 - -
Vimu8g00145 616 Gene3D Phosphorylase Kinase; domain 1 248 355 - -
Vimu8g00145 616 Gene3D Ribonuclease Inhibitor 15 191 IPR032675 -
Vimu8g00145 616 SUPERFAMILY Protein kinase-like (PK-like) 258 567 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00145 Vimu-Chr8 5405638 5414221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00145 17 616 Receptor kinase-like Gene Family AT1G71830 87.213 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu8g00145 Pkinase 5.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00145 K13418 - gmx:100813918 1048.88