Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00137 ATGGGTCACAACTTGAGAGCCAACCTGGCCCAACACGGGTTCGGGCCAGCCACCGTTGCTACCGCCATAGACCCAGGTTCAACTCTTTCAGCCTCTTCCACCTCCAACCAAACGTGGTCTTCTCCCAGGGGCACCTTCTCTCTGGGATTCATCTCCGTTCAGCCACCCACCATCCCTCCTTCCTTCATCGCCGCCATCTCCTACACCGGTGGCGACCCTGTTGTCTGGTCCGCCGGACACGGCGCAGCTGTGGACTCCGGCGGGTCCTTACAGTTCCTCTCCTCCGGCAACCTCCGCCTCGTCAACGGCTCCGGCTCCACCGTGTGGGAATCTGCCACGGCGGGCGCCACTTCGGCAGCCCTTGAGGACAGTGGCAATTTGATAATTTCGAACGGCACAAGCACCCTCTGGACAAGCTTTGACAACCCCACCGATACCCTGGTGCAGTCTCAGAATTTCAGTGTTGGTAAGGTTCTCACTTCCGAAAGTTACTTTTTTAGCCTTAGTGGAATTGGGAATTTGACTCTGAAGTGGAACAACAGCATAGAGTACTGGACTCAGGGTTTGAATTCTTCTGTGAATGTTAGTTTGGAGTCCCCTGTGTTGTCTTTGACATCGATTGGGCTTTTGGAACTTTCTGATGTGAACTTGGGTACTCCTGTTCTTGTTGCCTATAGTAGTGACTATGATTTGAATGCTGATGTGTTTAGGGTGTTGAAGTTGGACAATGATGGGAATTTGAGGATTTATAGTACTAATCTAGGTGGTGGAACTTCTACTGTTAGATGGGCTGCTGTTGCAAATCAATGTGAGGTTTATGCTTACTGTGGGAACTATGGTGTATGCGGTTACAATGATTCCAGCACGGTATGTGGTTGCCCTTCAGAGAATTTTGAGATGGTTGATCCGAATAATGGTAGGAAAGGGTGTAGGAGGAAGTTGAGTCTGGATAGTTGCCAAGGGACAGCGACCATGTTGACCTTGGATCATGCTGTGGTGTTGAGTTATCCCCCTACAACGACATCGGAGACGTTTTTCATTGGTTTATCAGCCTGTAGAACGAATTGTCTTTCGAGTTCAAGTGCCTGTTTTGCTTCTACTTCCTTGTCAGATGGCACAGGGCAGTGTGTAATAAGATCAATAGATTTTGTTAGTGGATATCAAGATCCTTCGTTGCCTAGCACTTCTTATTTTAAGGTTTGTCCACCGTTGGCACCAAATCCACCACCCTCTTCGGCAGGGACTGTGAGGGAAAGGAGGTCCAAGGTGCCTGCATGGGTTGTGGTTGTGGTTGTTTTGGGTACTCTTTTTGTTTTGCTAGCCTTGGAAGGGGGTTTGTGGATGTGGTGTTGTAGGAATAACAAGAGGTTTGGTGCGTTGTCAGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCTCCAGTGCAGTTCTCGTACAAGGAGCTCCAGCAAGCGACAAAGGGGTTCAAGGAGAAGCTCGGAGCTGGTGGATTTGGTGCTGTTTATAGAGGCACTCTTGTTAACAAAACTGTTGTTGCAGTGAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCCACTATAAGTAGCACTCATCATCTGAATTTGGTGAGGCTTATTGGCTTTTGCTCAGAAGGGCGCCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGATCTCTTGATAATTTTCTATTCCAGACAGAACATCATTCAGGAAAATTGTTGAATTGGGAGTACCGATACAACATTGCTCTTGGCACAGCAAGAGGCATCACATACCTACACGAGGAGTGCCGTGACTGCATAGTCCATTGTGACATCAAACCTGAAAACATTCTCTTGGATGAGAATTATGTTTCCAAAGTCTCTGATTTTGGTCTTGCAAAGCTTATCAATCCCAAAGACCATAGGCATCGGACCTTAACAAGTGTGAGAGGAACCAGAGGATACTTAGCTCCTGAGTGGCTTGCAAACCTTCCTATAACATCCAAATCTGATGTTTACAGCTATGGTATGGTTTTGTTGGAGATTGTGAGTGGAAGAAGGAACTTTGATGTTTCAGATGAAACAAACAGGAAGAAGTTCTCCATCTGGGCCTATGAAGAGTTTGAGAGAGGTAACATCAGTGCAATTTTGGACAAAAGACTAGCTGGGCAAGAAGTTGACATGGAGCAAGTAAGAAGGGCAATTCAAGCAAGCTTTTGGTGCATCCAAGAGCAGCCATCTCAGAGACCAACAATGAGCAGAGTGCTGCAAATGCTAGAAGGAGTAACTGAGGTTGAAAAGCCACCTGCCCCAAAATCAGTGATGGAAGGAACTGTCAGTGGAACCAGCACATACCTCAGTAGCAATGCCAGTGCATTCTCCACTCTTGGAGTTTCACCCCCGGGACCCTCCTCTACATCATCATTTCAGATTAGTGGTGTTTCAACCTTCAACTCAGGAAGGACCCCTGAGAAGGCAACCTCATCTCTTTTACAATCAGACACATGA 2514 0.4733 MGHNLRANLAQHGFGPATVATAIDPGSTLSASSTSNQTWSSPRGTFSLGFISVQPPTIPPSFIAAISYTGGDPVVWSAGHGAAVDSGGSLQFLSSGNLRLVNGSGSTVWESATAGATSAALEDSGNLIISNGTSTLWTSFDNPTDTLVQSQNFSVGKVLTSESYFFSLSGIGNLTLKWNNSIEYWTQGLNSSVNVSLESPVLSLTSIGLLELSDVNLGTPVLVAYSSDYDLNADVFRVLKLDNDGNLRIYSTNLGGGTSTVRWAAVANQCEVYAYCGNYGVCGYNDSSTVCGCPSENFEMVDPNNGRKGCRRKLSLDSCQGTATMLTLDHAVVLSYPPTTTSETFFIGLSACRTNCLSSSSACFASTSLSDGTGQCVIRSIDFVSGYQDPSLPSTSYFKVCPPLAPNPPPSSAGTVRERRSKVPAWVVVVVVLGTLFVLLALEGGLWMWCCRNNKRFGALSAQYALLEYASGAPVQFSYKELQQATKGFKEKLGAGGFGAVYRGTLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFQTEHHSGKLLNWEYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVSKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFDVSDETNRKKFSIWAYEEFERGNISAILDKRLAGQEVDMEQVRRAIQASFWCIQEQPSQRPTMSRVLQMLEGVTEVEKPPAPKSVMEGTVSGTSTYLSSNASAFSTLGVSPPGPSSTSSFQISGVSTFNSGRTPEKATSSLLQSDT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00137 837 CDD STKc_IRAK 493 763 - -
Vimu8g00137 837 ProSiteProfiles Bulb-type lectin domain profile. 20 142 IPR001480 -
Vimu8g00137 837 ProSiteProfiles Protein kinase domain profile. 487 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00137 837 FunFam S-receptor-like serine/threonine-protein kinase 459 561 - -
Vimu8g00137 837 Pfam D-mannose binding lectin 74 167 IPR001480 -
Vimu8g00137 837 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vimu8g00137 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vimu8g00137 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 562 771 - -
Vimu8g00137 837 Gene3D Transferase(Phosphotransferase) domain 1 562 777 - -
Vimu8g00137 837 Pfam PAN-like domain 319 385 IPR003609 -
Vimu8g00137 837 PANTHER OS07G0415500 PROTEIN 22 773 - -
Vimu8g00137 837 MobiDBLite consensus disorder prediction 797 837 - -
Vimu8g00137 837 Gene3D - 143 265 IPR036426 -
Vimu8g00137 837 ProSiteProfiles Bulb-type lectin domain profile. 144 262 IPR001480 -
Vimu8g00137 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 189 IPR036426 -
Vimu8g00137 837 Pfam Protein kinase domain 490 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00137 837 Gene3D - 19 141 IPR036426 -
Vimu8g00137 837 SUPERFAMILY Protein kinase-like (PK-like) 470 762 IPR011009 -
Vimu8g00137 837 Gene3D Phosphorylase Kinase; domain 1 455 561 - -
Vimu8g00137 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 142 - -
Vimu8g00137 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 143 265 - -
Vimu8g00137 837 Pfam S-locus glycoprotein domain 232 294 IPR000858 GO:0048544
Vimu8g00137 837 SMART serkin_6 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00137 837 SMART blect_4 30 143 IPR001480 -
Vimu8g00137 837 PIRSF SRK 7 814 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00137 Vimu-Chr8 5253249 5257359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00137 460 771 Receptor kinase-like Gene Family AT5G20050 44.615 4.75e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu8g00137 Pkinase 7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00137 - - gmx:100795819 1368.99