Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00129 ATGAGAGATTATGAATTCTCTGTAAGAGCTGCGGAACTAACCACTCTATTAGAAAGTAGAATTACCAACTTCTACACAAATTTGAAAGTGGATGAGATCGGTCGAGTGGTCTCCGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGTGGTGTGAAAGGAATAACATTGAATCTTGAGAATAAGAATGTCGGAATTGTGGTCTTTGGTAGTGGTACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGATAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAATGAAAGCCCCTGGTATTATTGAACGTAAATCTGTGCACGACCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGTCGTGGTCAACGAAAACTTATAATCGGGGACCGACAAACTGGAAAAATAGCTATTGCTATCGATACCATATTAAATCAAAAGCAAATGAACTCAAGGGCTACCTCAGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACATAAACGCTCAACTGCTGTGGCATATCGACAAATGTCATTATTGTTACGCCGACTACCAGGTCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTGGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGTAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCGGGAGACGTATCGGCCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATATGTTTGGAAACAGAGCTCTTCTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAATCTATGAAACAAGTCTGCGGTAGTTTAAAACTTGAATTGGCACAATATCGTGAAGTCGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGTTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATGGAAAAACAAATTCTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATAAAATGCCATTAGATAAAATTCCTCAATATGAAAGAGACATTCTAACTACTATTAAACCTGAATTACTACAATCACTAAAAGGGTATAAGGCTATATCTTCATGGAATAATATGGCTCGCGGCCCTACTCCACATAGTAGGGATACTAGACATTCAGTTATGAGTCTTTGCACTCAATGCAATCTGACTCGTACAGATGTCATGGTTGAAAAGGGTCCTATGACATTTTGTATGGGTTACTACCTGAACAGACATGCGCCGACTGTAGTTCGCCTACATTATGAAAAAACCATTATCATGAGAAGAACATTAAACAAAACAGCTTATCAAGAAGTTGTTGCTCAAGTAGAGAAGGAATACAATGTATTCACTATTACTGAGAGAATCCGTAATTTATCTTTGTATGATAGCAGTTCTAGTAGTAGCTCTAGCTCTAGCTCTAGCTTTACTGGTGTAAATAATCCTAATTTTGTTACTCTGGCTCCTACTGCATCTATTTTGGAAAGATTTAAGATTCGTACTAATCCATCGGTGTTTACTCGGAATGTTATTGAAATGACTAAAGCACCATTTTTTGATATACATAACCCTATTATGAATATGAATTTAACCGAACAGGCTAGTAGTTATATGATGTCGATTGGCTTTCGCTTTATGCCAAGACAAGGGGAATTCTTAGTCAAAGATCTACGAGCTCCTGATACTTTAGTGGGATTAAGAAAGTTAAGAGATAACCTAGGTTTATCCTTAACAAAAGGAACTCTTAGCAGTACTCCATTACTGAAGTTAAAGGGGATTTCAGACATGGTTTCAAATAGTATGCAGTCGTTGGCTTCTCGTGTCTTGATTGAAGCAATTACATTTAATGTTGGCTATTATGGTCGATTCTTAATCTTGGTTCAAATGGGTATTGGTTGTACTGTATGGTATGGCTTCGCTCCTGGCGATGGTATGACTCTTCCAGTGGAAGGATTGACCCCCCTCTTTAATCCTATTTCTAATTATGACACCATCTTTACTAATCCTGATGTTCATGTTCTACCTGGCTTTAATAAGATGACTTTAGTTGAGAGCGTTGATCATCCAGTAGCACCGCTGTCACAGGCATTTGATAAAGATATGCCTTTTATGGATATGGATATTGAAATACCAAAATCTAATAAATCGATTCTTGTCGGTGTTAGCTTAGGACTAGCAGTAGCTATCTTATTTACATTTGGGATTAACCCGAGATGCGGGGAACTTATCATATGA 2421 0.4031 MRDYEFSVRAAELTTLLESRITNFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGITLNLENKNVGIVVFGSGTAIKEGDLVKRTGSIVDVPAGKAMIGRVVDALGVPIDGRGALMKAPGIIERKSVHDPMQTGLKAVDSLVPIGRGQRKLIIGDRQTGKIAIAIDTILNQKQMNSRATSESETLYCVYVAIGHKRSTAVAYRQMSLLLRRLPGREAFPGDVFYLHSRLLERAAKRSDQTGVGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKSMKQVCGSLKLELAQYREVAAFAQFGSDLDVATQALLNRGARLTEVLKQPQYAPLPMEKQILVIYAAVNGFCDKMPLDKIPQYERDILTTIKPELLQSLKGYKAISSWNNMARGPTPHSRDTRHSVMSLCTQCNLTRTDVMVEKGPMTFCMGYYLNRHAPTVVRLHYEKTIIMRRTLNKTAYQEVVAQVEKEYNVFTITERIRNLSLYDSSSSSSSSSSSSFTGVNNPNFVTLAPTASILERFKIRTNPSVFTRNVIEMTKAPFFDIHNPIMNMNLTEQASSYMMSIGFRFMPRQGEFLVKDLRAPDTLVGLRKLRDNLGLSLTKGTLSSTPLLKLKGISDMVSNSMQSLASRVLIEAITFNVGYYGRFLILVQMGIGCTVWYGFAPGDGMTLPVEGLTPLFNPISNYDTIFTNPDVHVLPGFNKMTLVESVDHPVAPLSQAFDKDMPFMDMDIEIPKSNKSILVGVSLGLAVAILFTFGINPRCGELII 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00129 806 CDD ATP-synt_F1_alpha_C 318 422 IPR000793 GO:0015986
Vimu8g00129 806 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 210 307 IPR000194 GO:0005524
Vimu8g00129 806 FunFam ATP synthase subunit alpha, mitochondrial 99 209 - -
Vimu8g00129 806 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 15 99 IPR036121 GO:0046034|GO:1902600
Vimu8g00129 806 CDD F1-ATPase_alpha_CD 99 310 IPR033732 GO:0032559
Vimu8g00129 806 FunFam ATP synthase subunit alpha 6 98 - -
Vimu8g00129 806 Hamap ATP synthase subunit alpha [atpA]. 6 450 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu8g00129 806 CDD ATP-synt_F1_alpha_N 32 97 - -
Vimu8g00129 806 Gene3D - 210 314 IPR027417 -
Vimu8g00129 806 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 145 209 IPR000194 GO:0005524
Vimu8g00129 806 Gene3D - 99 209 IPR027417 -
Vimu8g00129 806 FunFam ATP synthase subunit alpha 315 428 - -
Vimu8g00129 806 ProSitePatterns ATP synthase alpha and beta subunits signature. 298 307 IPR020003 GO:0005524
Vimu8g00129 806 Gene3D - 315 427 IPR038376 -
Vimu8g00129 806 Pfam ATP synthase alpha/beta chain, C terminal domain 314 419 IPR000793 GO:0015986
Vimu8g00129 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 313 IPR027417 -
Vimu8g00129 806 FunFam ATP synthase subunit alpha, mitochondrial 210 314 - -
Vimu8g00129 806 Gene3D - 7 98 IPR023366 -
Vimu8g00129 806 Pfam ATP synthase alpha/beta family, beta-barrel domain 30 97 IPR004100 GO:0046034|GO:1902600
Vimu8g00129 806 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 316 420 - -
Vimu8g00129 806 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 209 422 IPR005294 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00129 Vimu-Chr8 4841068 4843836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00129 199 353 Primary Pumps ATPases(2) AT1G76030 28.125 2.85e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00129 K02132 K02111 sind:105179845 641.728