Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00126 ATGGAGGCACCATCTCCGACCAAACCCATTGACCCAACAAAGCCTTCCATCACCACCCTCAGTGTGGAAGCCAGCCAGGCCGAACCGAGCCCACTTCGAAAAATGTTTGCTGTGGCGTCCATAGCCGCGGGCATACAGTTCGGCTGGGCTCTTCAGCTTTCTCTGCTCACCCCTTATGTTCAGCTCCTAGGAGTTCCACACGCCGCAGCCTCTTTCATCTGGCTCTGCGGTCCCATCTCCGGACTTGTGGTGCAGCCCATTGTGGGCTACTACAGCGACAGAAGCACTTCTCGCTTCGGTCGCAGACGCCCCTTTATTCTTGGAGGTGCAGTGGCTGTCGCCATAGCTGTATTTCTTATCGGTTATGCAGCCGATATAGGATACTCAGCTGGCGACGACATAACCAAAAAAACCCGTCCTCGAGCTGTTGGGGTGTTCGTCATAGGATTTTGGATCCTAGATGTTGCAAACAACATGTTACAAGGTCCTTGCCGTGCCTTTCTGGCTGACTTAGCGGCTGGGGACCAGAGAAAAACCAGAATAGCAAATGGGTTTTTCTCTTTCTTCATGGCCGTCGGCAACGTGCTGGGATACGCAGCGGGATCTTTTAGTGCTCTGCACAAGATTTTTCCCTTCACGGAGACTAAGGCGTGCGATGTTTTTTGCGCCAATCTGAAAAGTTGTTTCTTTTTCTCGATCTTGTTACTGTTGTTCTTGGCCACTGTAGCTCTCATTTACGTAAAGGACAAGCCCGTGCCGCCACGGGCGGTGCAAGAGGACGCGCAGCCCTCGTGTTTCTTTCAGCTCTTCGGGGCGTTGAAGGAGCTGAAAAGACCCATGTGGATGCTCATGCTGGTGACAGCTATCAACTGGGTCGGGTGGTTTCCCTACTTCCTGTTCGACACCGACTGGATGGGTCGCGAGGTGTACGGCGGAACGGTGGGCGAGGACGCGTATGCGAAGGGGGTGCGCGTGGGGTCTCTGGGACTCATGATAAACGCCGTCGTTTTGGGGTTCATGTCGCTGGCCGTTGAACCATTGGGGCGCATGGTTGGGGGAGTGAAGAGGCTGTGGGGCATCGTGAACTTCATTCTCGCCATTGGGTTCGGAATGACCATCGTTATAACCAAGGTGGCGGAGCACGAGCGCCACTTGAACCCCGCCGCAGTGGGCCACCCCTCCAGCGGCGTCACAGTTGGGTCCATGGTTTTCTTCGCCGTTCTCGGAGTACCCCTTGCGATTACTTTCAGTGTTCCTTTTGCTCTTGCATCAATATACTCCAGTGCTTCAGGAGCAGGGCAAGGTTTATCATTGGGAGTCCTGAATCTTGCAATTGTGGTACCACAGATGGTGGTGTCTGCATTGAGTGGTCCTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGGGCGGCGGCGGCGGCGCTGAGCGCCATAATGGCGATTGTGTTGCTGCCAACTCCAAAACCAGCTGATGAGGCGAAGGCTGCAAGCATGGTTGGAGGGGGCTTTCACTAG 1530 0.5477 MEAPSPTKPIDPTKPSITTLSVEASQAEPSPLRKMFAVASIAAGIQFGWALQLSLLTPYVQLLGVPHAAASFIWLCGPISGLVVQPIVGYYSDRSTSRFGRRRPFILGGAVAVAIAVFLIGYAADIGYSAGDDITKKTRPRAVGVFVIGFWILDVANNMLQGPCRAFLADLAAGDQRKTRIANGFFSFFMAVGNVLGYAAGSFSALHKIFPFTETKACDVFCANLKSCFFFSILLLLFLATVALIYVKDKPVPPRAVQEDAQPSCFFQLFGALKELKRPMWMLMLVTAINWVGWFPYFLFDTDWMGREVYGGTVGEDAYAKGVRVGSLGLMINAVVLGFMSLAVEPLGRMVGGVKRLWGIVNFILAIGFGMTIVITKVAEHERHLNPAAVGHPSSGVTVGSMVFFAVLGVPLAITFSVPFALASIYSSASGAGQGLSLGVLNLAIVVPQMVVSALSGPWDALFGGGNLPAFMVGAAAAALSAIMAIVLLPTPKPADEAKAASMVGGGFH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00126 509 NCBIfam sucrose/proton symporter 31 493 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vimu8g00126 509 PANTHER SUGAR TRANSPORTER 31 488 - -
Vimu8g00126 509 Pfam MFS/sugar transport protein 35 294 - -
Vimu8g00126 509 Gene3D MFS general substrate transporter like domains 27 489 IPR036259 -
Vimu8g00126 509 CDD MFS_SLC45_SUC 35 472 - -
Vimu8g00126 509 FunFam Sucrose transport protein 29 489 - -
Vimu8g00126 509 SUPERFAMILY MFS general substrate transporter 33 494 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00126 Vimu-Chr8 4665500 4668950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00126 7 509 Sucrose Transporter Gene Family AT1G22710 62.378 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00126 K15378 - gmx:100786411 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00126 8 4665500 4668950 Vimu8g00126 8 4665500 4668950 ECH
Vimu3g02833 3 42581400 42584158 Vimu8g00126 8 4665500 4668950 PCT