Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00123 ATGCTCTTGGTGATGTTACGGTTGATGATTGCTCGCATGCTGCATAAATATTGGAAGCTAATTATCCCTCGATTGTTGTTATGCCTAATATGCCATCTGGTCACCTTAAGTATAAACTACATAATTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGACAGGATTGATGTTTATGCATTTGGTGTTGTTCTTCTTGAGCTCCTTTCAAGGAGAAAGCCCATAAGTAATGATTATCCCAAAGGCCGAGAGAGCCTTGTCATGTGGGTGCCCCTCTTCGCAAACCTTCATTCCCGTACCTCTTCTTCACTGAACTTCTTCCTTGTCAGTCCCACAGCTGTTCTCTTCTCCCTCTCTGAACCAAAGTTTCTTCCGCATCAGTGTTTTTTCCGATCAAACTTTGCCATCGCGAGTTGTGTGGATTAG 432 0.4282 MLLVMLRLMIARMLHKYWKLIIPRLLLCLICHLVTLSINYIIYMAPEYFMYGKVNDRIDVYAFGVVLLELLSRRKPISNDYPKGRESLVMWVPLFANLHSRTSSSLNFFLVSPTAVLFSLSEPKFLPHQCFFRSNFAIASCVD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00123 143 Pfam Protein tyrosine and serine/threonine kinase 41 75 IPR001245 GO:0004672|GO:0006468
Vimu8g00123 143 PANTHER OS08G0249100 PROTEIN 43 94 IPR046958 -
Vimu8g00123 143 Gene3D Transferase(Phosphotransferase) domain 1 31 113 - -
Vimu8g00123 143 SUPERFAMILY Protein kinase-like (PK-like) 33 103 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00123 Vimu-Chr8 4614501 4616548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00123 22 97 Trihelix Transcription Factor Family AT1G68690 46.753 2.07e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu8g00123 PK_Tyr_Ser-Thr 9.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00123 - - pvy:116140143 99.3673