Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00116 ATGCATGCCTCTACTGTTATTGCTTCTCAAACTGAATTGTTGACTATCGGGCAGCAGCAGGATTCTTATCCATTTATTTTATGTGTAGGTGGGTGGGGGCCGGTGTTCTTTGGGGTTGCAGGGAGGGATGGTGAGGATCATTTGCATATTGTGATTTGTGAGGATCATGGATGGGTTTTTGTGGGGATTTATGACGGGTTTAATGGCCCTGATGCCACTAATTTTCTTCTCAACAATCTGTTTTATGTTGTGAATGATGAGCTCAAGGAGATGTTGTGTGGTCACAACAAGTTTGAGCTCAAGGATTCAGACTCTTTGGAGCTGAGGGAGAAGGTGTTGTTTAGGGGAAATGGAGTGGTTTATGGTTGTTGTTCTTCAGGTGATAATAGAGAAAATTATCCAATAGAAAGTGGAGAGTTAAATTTGGAATGTGTGTCAGAAGGAATAAAAGGAAAGGGAATGAATGAGATAAACATTGAAAGAGTGGATTTGAGTCATTCGGATGTGTTACAGGCTCTTTCAGAGTCACTGAGGAAGACTGAGGATGTATTCATGAGGACTGTTGAAGAGATGATTGGTCAAAACCCTGTGTTGGCTATGATGGGTTCTTGTGTTTTGGTGATGTTGATGAAGGGTCAAGATGTTTACCTGATGAATGTGGGAGATAGTCGTGCTGTGTTGGCCACTCACAGTGGGGAATCTCTTCAGCTCACCGAGGAGCATAGCACTCATGTGAAAGAGGTAGCTTGTGCTTACCTTTGTGAATCTCAGGAGGTTTACAGAATCATGAGGGAGCATCCTGATGACCCTTTAGCAGTAACTAGAGGCCGGGTGAAGGGTCGCTTGAGTGTCACAAGGGCTTTTAGGGCAGGGTTCCTTAAGCAG 885 0.4395 MHASTVIASQTELLTIGQQQDSYPFILCVGGWGPVFFGVAGRDGEDHLHIVICEDHGWVFVGIYDGFNGPDATNFLLNNLFYVVNDELKEMLCGHNKFELKDSDSLELREKVLFRGNGVVYGCCSSGDNRENYPIESGELNLECVSEGIKGKGMNEINIERVDLSHSDVLQALSESLRKTEDVFMRTVEEMIGQNPVLAMMGSCVLVMLMKGQDVYLMNVGDSRAVLATHSGESLQLTEEHSTHVKEVACAYLCESQEVYRIMREHPDDPLAVTRGRVKGRLSVTRAFRAGFLKQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00116 295 SMART PP2C_4 26 294 IPR001932 -
Vimu8g00116 295 PANTHER PROTEIN PHOSPHATASE 2C 42 294 IPR015655 GO:0004722|GO:0006470
Vimu8g00116 295 Gene3D - 37 295 IPR036457 -
Vimu8g00116 295 CDD PP2Cc 44 295 IPR001932 -
Vimu8g00116 295 SUPERFAMILY PP2C-like 42 294 IPR036457 -
Vimu8g00116 295 Pfam Protein phosphatase 2C 153 288 IPR001932 -
Vimu8g00116 295 ProSiteProfiles PPM-type phosphatase domain profile. 28 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00116 Vimu-Chr8 4470066 4473589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00116 41 295 PP2C-type Phosphatase Gene Family AT1G07630 41.196 2.29e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00116 - K01102 gmx:100794388 380.563