Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00113 ATGGAAGGTTCAGAGGAAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGATGCAGGTGGAGAAAGGAGAAAGAAAGGAAGGGCAAGGGATGATGATACTAATTCTCTTGTTATTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTGCTACAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTCGTTGAAGATGGGAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTTGAGAATCTCATTGAGTTGTATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTACTTTGCTGACGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCCCCTTTCTATGACATGGTCATGGAAGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTACGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCTGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACACCCTGAAAGAATTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCAAAAGGGTTTAGTAACCACCTAGTGTTTGAGTTCCAAGGGCTTCTAAGAGGCTCATCAAGGCTCGTCAACCTGAGGAGAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAATGTCTCGGACACATTAGGCCTTGTTCATTCTCTTGGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCATTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGGGTTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAGGCGAAGCTGCTACTGAAGATGAGGACCCATTATTATCCTCTACAGTTTGACGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGAGATGAAGGAAGAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4289 MEGSEEEELLNLTLSVDAGGERRKKGRARDDDTNSLVIPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNTLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLVNLRRKKNETLAVNLVSYLNTLSSFMNVSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFDEEGGSGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00113 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 456 IPR005202 -
Vimu8g00113 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Vimu8g00113 463 Pfam GRAS domain family 80 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00113 Vimu-Chr8 4314493 4315884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00113 66 461 GRAS Transcription Factor Family AT1G14920 33.007 1.40e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu8g00113 GRAS 2.4e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00113 - - gmx:100798251 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00113 8 4314493 4315884 Vimu8g00113 8 4314493 4315884 ECH
Vimu8g00113 8 4314493 4315884 Vimu3g02810 3 42351727 42352929 PCT