Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00106 ATGGATACAAATGGGAGTCTAGGTGCCAACAACTGGGCAAGGTCTTCATCGTTAACCTCGGATTCCATGTCATTCCCAGGTTTTGGTCTGCAGAATAATCAACCCAAATGGGATGATCCCTCAAATTCTGATTATGGGATCAGAGCAGAAGTACCTTTCAAAGACTTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCCTTGCAACTCAAACAACGAGATTGAGATCCCTAATCAAGAAAACTGTCATCTGAATGAATCATCACAAAACAGTGCACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCACTTGATTGTTCGTCAAAAAGGCATTGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTTATCACAACTGATCTCACATCAATCATTATTCAATTGATCTCTACTGCAGGTAGTCTGCTCCCATCTGTTAGGCACAACCTTGCAAACACAGCTTCATTGTTTGGACAGATTGATCAGCTTCGTGGGACGACCATTCCTTCTGGAACTGGTGGAAGTAGCAGCTGTATTCAGCCAGAAAATAATGGTGGAAAGAAAATGTCTGATCAGTCCATGCAAACTGATCTACCTAATAACTGTGAAATGGAGCCAAACTACAATGTGGTAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTCTACAATTAGAGAAAGAAGAAATCCTTGCTCCTCACACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTGCGAATGCATATGCGCGGCCATGGCGACGAGTACAAAACCCCAGCAGCTCTTGCAAAACCTCACAAAGAATCTGGATCACCAAAGCTTATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAGCCTCTGAAGACTATCCTGTGTGTGAAAAACCATTACAAAAGGACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGTTGTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACGCTAAAGGGGTAGCTGAGCCACCTAATCATGACAGCAAAGAAAACAGTAAGGTGGGGAATGTGCAGTTCAGTTTTGGATCAAGTCCTTCTTCAAATGGAAATGAAGTTGAAAATTTGATGGATGTAAAAGGCAATTGTGATGATCCTATAAGTTTTTTCTCATCATTGAACTTTGACAACAGCTTTGGTGGGTTTAATGAATTCACAAGACCTCTATTTGATGACTCAGAAGGCTCATTCTCTTTTGGGATTCCTGGATCTTTCAAATCCGACGGAGTATCCAGCCCTGACAATCTTTTGTAA 1539 0.4256 MDTNGSLGANNWARSSSLTSDSMSFPGFGLQNNQPKWDDPSNSDYGIRAEVPFKDFNQPSQTQSPLPCNSNNEIEIPNQENCHLNESSQNSALQDWDPNVMLNNLSFLEEKIHQLQDLVHLIVRQKGIGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANTASLFGQIDQLRGTTIPSGTGGSSSCIQPENNGGKKMSDQSMQTDLPNNCEMEPNYNVVEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKGVAEPPNHDSKENSKVGNVQFSFGSSPSSNGNEVENLMDVKGNCDDPISFFSSLNFDNSFGGFNEFTRPLFDDSEGSFSFGIPGSFKSDGVSSPDNLL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00106 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Vimu8g00106 512 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Vimu8g00106 512 SUPERFAMILY beta-beta-alpha zinc fingers 264 291 IPR036236 -
Vimu8g00106 512 MobiDBLite consensus disorder prediction 1 75 - -
Vimu8g00106 512 MobiDBLite consensus disorder prediction 55 75 - -
Vimu8g00106 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 80 488 IPR044300 GO:0010044|GO:0010447
Vimu8g00106 512 Gene3D Classic Zinc Finger 250 316 - -
Vimu8g00106 512 SMART c2h2final6 352 374 IPR013087 -
Vimu8g00106 512 SMART c2h2final6 314 347 IPR013087 -
Vimu8g00106 512 SMART c2h2final6 266 288 IPR013087 -
Vimu8g00106 512 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00106 Vimu-Chr8 4173001 4174539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00106 233 496 C2H2 Transcription Factor Family AT1G34370 70.803 3.16e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu8g00106 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00106 - - gmx:100500526 893.649