Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00102 ATGACTCTTGCCTCAAGCCGCTCGAGGGGAAGTAAGAAAAATGGCTTCAGAAATCTCCGCTCAACGCAAGAAGTCAGAAAAATGACTTCTGCCTCAAGCCGCTCGGGGGGAAAAAGCTCGAAGAAGAACTCCTATCAGTCGACTACTCAAGAGGTTCAGTCCCTTCTTACTCAAAACACCTACTTCGGCTTTGTCAGGTATTACCACCTTTCTTCATCTTTCCTTAGTGTTGTTTACTTCCTCTTTTCTTTCTCTCCCATGGTCTTCTCCCTGCTATCACAAACCCAAACACAAACCATGAACAGTCTCTCAAAGAATCTTACTGGTAGGATTCCATGGACTGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCGTGCCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGGTATTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTAGAGACTCTTGATGTCTCCAAAAACCATCTGAGCTCAATCCATGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAGCTGTTGAATTTTAGTAATAACAATTTAGGTATTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATGCAATGAGAGGGAATATTGTTTTAGAGATAGATGAGTTGGTTAGCCTCAAAATTTTGAATCTTACTTTCAACAGATTCTCTGGGTCTCTTCCTACCAAATTGGGAAAGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAACAATAGATTTGAAGGCAAAATCCCTGATGAATTATTCAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATATACTTTCACACTCTATTCCTACCAATATTGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCACTAATAACCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAACTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGCTATAATGCTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGATTTGACCAATAATACGTTAAATGGGTCTTTACCTAGGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGCAATCAGCTGAGTGGAAACATTCCTTCAGATGCTTTTGTAGAACTTCATAATTTGACATACTTGGAGCTTGATAACAATATCTTGATGGGATCGATACCAGCTGAATTGAGTTCTTGCAAGAGTTTGACATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTGTATTGCCACAACAGCTTGGTAGTCTTACCAATCTCTATGTCTTGAAGCTCCAATTGAACAATCTTAGTGGTGCAATCCCAACTCAAATTGGCCAACTTAGTAAGTTGTTAACCCTGAATTTGAGCCGGAATTCTCTGAGTGGACCAATTCCACCTGATATTGCAAATTTAAGCACTCTTAATTTCCTGTATTTGCAAGGCAACAAGCTTAATGGTTCCATACCGACATCCATTGGCATGTTGAATGATCTTTTAGAACTCCAACTTGGGGAAAACCACCTGGGAGGTGTGATTCCAAGCATGCCATTGAGTCTGCAGGTTTCATTGAATCTTAGTAGCAACAACTTTAGTGGTTCTATTCCTACCAGTTTTAGTAGATTAAGAAGCCTAGAAATCTTGGATCTCTCAAATAACAGCTTTTCTGGTGGAATTCCTGATTATCTTACTGGCATGCCGGCTTTGACACGGTTGATACTTTCTAACAATCCCCTATCTGGAGCAATCCCAAACTTCAGTCACCATATTTATGTTGAATATTTTGGAACTAATCTAAAAAATAATACTGCACAGAAGAACCCAACTGCCAACACAGGGCCCAGGGGGGCCAAGAATGGAATAGGCATTGGAGTGGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCTTTGTCACTCTGTTGGTTTTGTCAGTGTCACGCCACTATTACAGGGTTAATGATGAGCATTCCCAGTCATCAGAAGTTCGTCAGCATCCTCAGGTCATGCAAAGTAATCTGTTAACTCCTAATGGAATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCCGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTATAAGGCTGTTATGCCGTCTGGTTCAATCTATTATGTCAAGAAACTGAACTGGTTTGACAAGGTATTCCAAGTGGGAAGTCATGATAAGTTTGTTAAAGAGCTAGAAGTATTGGCCAAATTGAACAATTCGAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGAGTTTATCTCAAATGGCTCCCTCTTTAATGTTCTTCATGGAAGCATGGATTTGACATTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTTATTGATCCCTCAAAAAGTACAGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGGAAAGCCTGCAGTGACTGAGGGAACGGAATTGGTGAAGTGGGTTATGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTAAGGATGCTCTTAAATGCTAGATGA 2958 0.404 MTLASSRSRGSKKNGFRNLRSTQEVRKMTSASSRSGGKSSKKNSYQSTTQEVQSLLTQNTYFGFVRYYHLSSSFLSVVYFLFSFSPMVFSLLSQTQTQTMNSLSKNLTGRIPWTGSDPCAWKGVSCDRANSSVVGISLSGYSLNSSDFLPLVCKIETLETLDVSKNHLSSIHDGFITECGKIKGLKLLNFSNNNLGILPTFHGFDALESLDMSFNAMRGNIVLEIDELVSLKILNLTFNRFSGSLPTKLGKSMVLEHLLLSNNRFEGKIPDELFSYENLTWIDLKNNILSHSIPTNIGKLSKLETLILSTNNLTGEIPTSLANITKLSRFAANQNNFTGSIPSGITKYLTSLDLSYNALSGAIPEDFLSPQQLQVVDLTNNTLNGSLPRKVSPNLFRLRFGSNQLSGNIPSDAFVELHNLTYLELDNNILMGSIPAELSSCKSLTLLNLAQNRLSGVLPQQLGSLTNLYVLKLQLNNLSGAIPTQIGQLSKLLTLNLSRNSLSGPIPPDIANLSTLNFLYLQGNKLNGSIPTSIGMLNDLLELQLGENHLGGVIPSMPLSLQVSLNLSSNNFSGSIPTSFSRLRSLEILDLSNNSFSGGIPDYLTGMPALTRLILSNNPLSGAIPNFSHHIYVEYFGTNLKNNTAQKNPTANTGPRGAKNGIGIGVAILIAIVAAIFLVGFVTLLVLSVSRHYYRVNDEHSQSSEVRQHPQVMQSNLLTPNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYYVKKLNWFDKVFQVGSHDKFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEFISNGSLFNVLHGSMDLTLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPGKPAVTEGTELVKWVMRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00102 985 SUPERFAMILY RNI-like 317 626 - -
Vimu8g00102 985 Gene3D Transferase(Phosphotransferase) domain 1 731 984 - -
Vimu8g00102 985 Gene3D Ribonuclease Inhibitor 560 652 IPR032675 -
Vimu8g00102 985 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Vimu8g00102 985 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515
Vimu8g00102 985 Pfam Leucine rich repeat 564 620 IPR001611 GO:0005515
Vimu8g00102 985 PRINTS Leucine-rich repeat signature 583 596 - -
Vimu8g00102 985 PRINTS Leucine-rich repeat signature 349 362 - -
Vimu8g00102 985 SUPERFAMILY Protein kinase-like (PK-like) 748 983 IPR011009 -
Vimu8g00102 985 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 706 817 - -
Vimu8g00102 985 Gene3D Ribonuclease Inhibitor 255 457 IPR032675 -
Vimu8g00102 985 Pfam Protein kinase domain 749 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00102 985 SUPERFAMILY L domain-like 111 388 - -
Vimu8g00102 985 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 397 982 - -
Vimu8g00102 985 Gene3D Ribonuclease Inhibitor 90 254 IPR032675 -
Vimu8g00102 985 Gene3D Ribonuclease Inhibitor 458 559 IPR032675 -
Vimu8g00102 985 ProSiteProfiles Protein kinase domain profile. 738 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g00102 985 FunFam Leucine-rich repeat receptor protein kinase EMS1 269 366 - -
Vimu8g00102 985 SMART LRR_typ_2 228 252 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 417 441 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 300 323 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 155 178 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 489 513 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 182 203 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 607 629 IPR003591 -
Vimu8g00102 985 SMART LRR_typ_2 583 606 IPR003591 -
Vimu8g00102 985 MobiDBLite consensus disorder prediction 1 45 - -
Vimu8g00102 985 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 94 248 - -
Vimu8g00102 985 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 649 - -
Vimu8g00102 985 SMART tyrkin_6 743 981 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00102 Vimu-Chr8 4075693 4080896 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00102 207 985 Receptor kinase-like Gene Family AT2G41820 35.595 2.32e-134 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu8g00102 Pkinase 4.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00102 - - gmx:100796647 1277.69