Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00093 ATGTGTGTATTGAACACAAGGGAGTTTTCACTCTATTCAATTGTTCCTTTTGATTACGCCACTGCTGCTACCAATGCATGCGCACCCGACAACCCCGACGTCGTCGTCTGGCTCATCCCTAACCCTAATTTTGGGTTGAAATTTGTGGACGTCCTTGACATCAAGTCCAATGAGATCTTCTACTCAGAAATAGACCCCTTCCTCGATTTTGATTACTCAAACTTTTTCCACAACAACAACTCCAAAAACGACAACGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCATCAACAACCATCAACAATCAGAAAGTTGTTTTGACATCGATTTTTGCCGCACCAAACTCTCCTCCTTTAATTACCCATCCCAATCTCTCAGGCAAAGCGTGAGTACTACCATCCATGGTGTCGGACGGGAACACCGTGTTGAAGATGTCGTACTCGTTTGGTTGAAACAGTTCGGAATCGAGTGGTATTGGTTTGTTAGGAGTAAGTGGAGGGCAAGGGGCGACTCAGTTGTGTGGGATGGAACAGAGAAGAGGAAGTATCGAAAGTTTGAGAAAACCATTCGATATGCATCGCGAAAGGCTTATGTGGAAACCCAACCCAAGATAAAAGGGTCGTTCGCGAAGCGAGCAGAAATTGACTCTGATTTGGATATAAAAGAGGGAACGATGGTGGGATGGTGCATGAATCTTGTGTTGGGAAATCTTATAATAATGATTAGTGATTCTGTGGGATTGATTATTAGGGAAAAATGTGAAGAATCGGTACGAACGTTATTCTTACCTGGAACGCGATGGGGAAGGTTGTTGCATTAG 831 0.4428 MCVLNTREFSLYSIVPFDYATAATNACAPDNPDVVVWLIPNPNFGLKFVDVLDIKSNEIFYSEIDPFLDFDYSNFFHNNNSKNDNVVPVQTKPSLAPSLINNHQQSESCFDIDFCRTKLSSFNYPSQSLRQSVSTTIHGVGREHRVEDVVLVWLKQFGIEWYWFVRSKWRARGDSVVWDGTEKRKYRKFEKTIRYASRKAYVETQPKIKGSFAKRAEIDSDLDIKEGTMVGWCMNLVLGNLIIMISDSVGLIIREKCEESVRTLFLPGTRWGRLLH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00093 276 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 182 219 IPR045281 GO:0009909
Vimu8g00093 276 Pfam CCT motif 182 215 IPR010402 GO:0005515
Vimu8g00093 276 ProSiteProfiles CCT domain profile. 173 215 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00093 Vimu-Chr8 3939797 3940815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00093 30 221 C2C2-CO-like Transcription Factor Family AT5G57660 41.872 3.47e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu8g00093 CCT 2.1e-08 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00093 - - gmx:100792197 215.312