Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00080 ATGATCGGAAACTTCATTGACGACATTGATTGCGGCAGCTTCTTCGACCACATAGACGACCTCCTCGAATTTCCTGCTGAAGAAACAGCAGCTGTCACTGACACTACTGTTGTTACACCGGTTGCTCCTCCTCCGACAAACTTCTGGTCCACAGAATCTGACTCGGTGCATGCCACCAATACGGTGTTTTCCGGCAATACTGTGCCGGACCTCTCGACAGAACTCTCTGTTCCGGTGAGATTCCAAACTCTTCTGACATCTCATTCGTCCATGTGTGTACTGAAAAAGCGTTTCATCAAGGTTCCTGGTTTTGGTGGCGTTTTTATTACATGTCTGTTAGCCTGCATAATTTTTGAAGACATTGAACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAGGAGGACACAACTCATGCTCAATTCCAGACAGCAAGTCCAGTCTCTGTCCTTGAAAGTAGCAGTTTTTACTCCGGAACGAAGGCTGCATCTCGTAACACGGAGATTTACATTCCCGTGCCATGTGGACGTGCACGCAGCAAGCGTGCACGTCCTGCAGCCTTCAATCCCTATCCAGTGATGCAGTTGATCTCGTCAGCGTCTTCCACTGGTGAGAACACACAGCACAACACCACCACCTCCAAAGCCTCCTCAGACTCTGAGAATTTCGCTGAATCCACCATCAAACCACCAAAACAGGCCTCTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCAGGTGGTGAAGACCACAATGCTGCAGCATCACAGACAGTGAGAAAATGTGTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGGCGGCTCTTCCCCGAATACCGACCGGCTGCCAGTCCGACGTTCTGTGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGACAGGCCCCAAATCTGGTTTTGCAGCAGATTCAGCTTCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA 1134 0.4929 MIGNFIDDIDCGSFFDHIDDLLEFPAEETAAVTDTTVVTPVAPPPTNFWSTESDSVHATNTVFSGNTVPDLSTELSVPVRFQTLLTSHSSMCVLKKRFIKVPGFGGVFITCLLACIIFEDIEQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDTTHAQFQTASPVSVLESSSFYSGTKAASRNTEIYIPVPCGRARSKRARPAAFNPYPVMQLISSASSTGENTQHNTTTSKASSDSENFAESTIKPPKQASGEHKKKKKIKVTFSGGEDHNAAASQTVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTGPKSGFAADSASSPELIPNTNSSLSLEYM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00080 377 Gene3D - 277 327 IPR013088 GO:0006355|GO:0008270
Vimu8g00080 377 FunFam GATA transcription factor 273 358 - -
Vimu8g00080 377 Pfam GATA zinc finger 283 316 IPR000679 GO:0006355|GO:0043565
Vimu8g00080 377 PIRSF Txn_fac_GATA_plant 2 90 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu8g00080 377 PIRSF Txn_fac_GATA_plant 105 371 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu8g00080 377 MobiDBLite consensus disorder prediction 219 247 - -
Vimu8g00080 377 ProSiteProfiles GATA-type zinc finger domain profile. 277 313 IPR000679 GO:0006355|GO:0043565
Vimu8g00080 377 CDD ZnF_GATA 282 329 IPR000679 GO:0006355|GO:0043565
Vimu8g00080 377 MobiDBLite consensus disorder prediction 219 261 - -
Vimu8g00080 377 SMART GATA_3 277 327 IPR000679 GO:0006355|GO:0043565
Vimu8g00080 377 ProSitePatterns GATA-type zinc finger domain. 283 308 IPR000679 GO:0006355|GO:0043565
Vimu8g00080 377 PANTHER GATA TRANSCRIPTION FACTOR 17 360 - -
Vimu8g00080 377 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 281 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00080 Vimu-Chr8 3720653 3723521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00080 66 347 C2C2-Gata Transcription Factor Family AT4G32890 38.516 3.13e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu8g00080 GATA 1.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00080 - - gmx:100792644 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00080 8 3720653 3723521 Vimu3g02750 3 41838853 41840799 PCT