Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00068 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTATGCAAAGGACTACCATGATCCTCCTCCAGCTGGTGAGGAACTCACACAGTGGTCCTTCTACAGGGCCGTGATTGCGGAGTTCATTGCCACACTGCTCTTCCTTTACATCACAGTGCTCACTGTTATTGGTTACAAGAGCCAGAGTGATGTAAAGGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGACCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACTTTTGGATTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGTTTGGGGGCCATATGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGGCTTACTACCACAGGTATGGTGGTGGGGCCAATGAGTTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCAGAGATCATTGGAACCTTCGTTTTGGTGTACACTGTCTTCTCTACTACAGACCCCAAGAGGAATGCTAGAGATTCTTATGTCCCGGTTTTGGCGCCACTTCCAATTGGTTTTGCTGTGTTCATGGTCCACTTGGCAACCATACCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATATACAACAAAGAGAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAACCATTGCAGTCTTCTACCACCAACTTCAATATAGTCAAGTTGGGTTTAAGGAG 813 0.4859 MAKHDVEGGSFYAKDYHDPPPAGEELTQWSFYRAVIAEFIATLLFLYITVLTVIGYKSQSDVKAGGDLCGGVGILGIAWAFGGMTFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYHRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSTTDPKRNARDSYVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKEKAWDDHWIFWVGPFIGATIAVFYHQLQYSQVGFKE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00068 271 CDD MIP 33 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 FunFam Probable aquaporin PIP1-2 21 271 - -
Vimu8g00068 271 Gene3D Glycerol uptake facilitator protein. 22 268 IPR023271 -
Vimu8g00068 271 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 262 IPR034294 -
Vimu8g00068 271 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Vimu8g00068 271 Pfam Major intrinsic protein 25 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00068 271 SUPERFAMILY Aquaporin-like 25 263 IPR023271 -
Vimu8g00068 271 NCBIfam MIP family channel protein 37 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00068 Vimu-Chr8 3599664 3601688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00068 1 271 Major Intrinsic Protein MIP AT2G37170 81.884 5.70e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00068 K09872 - gmx:547857 499.975