Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00065 ATGACTACGACCATTGAACAAAGAAGGAGAACATCTTGTGTGCATGCGTTGAGTGTGGAAGAGAAGAAGGAAGAGAAAGCTCGTTGGAATAGGTTTGAAGAAGAGAAAACTCAACTGAGAAAGGAGGTGATTGATGAAGAGAACATGCAGAAGAAGAACAAGATGATCTGTATTCAATTACACCACAAGCGTATTCAGTTACGCTGTTGTGAAGAAGACGGACATGCAGTTGTATTCGGTTACAGCACTAGCGTATCCGGTTATGTTGTTATGAAGAACAAGAACACGCAGTTGTATTCGTTACATGATGAAGAAGATGAACACGGGGCTGCGTATTCGGTTATGTCAAGCCGTATCCGATATTCAAGGCGGTGGTTGTATTCAGTTACCATGCTTGTGGACGTTGGCATCCTTGCAATCTTTGTGCGATGGACGACGGTGGACGATGCAGCGTTGGAAGGCGTCAGCTGGAAGCCTGAAGGTGGAGGACGGAACGACCGTGAGATCTCCGTGGTGGTGAACGATGCACCGACGACGAAGGTGTTCGTGACGATGGAGGATGTTGTCCGTGGTGGTGGACGATGCAGTGCGCATCACATGGAGGTTGATGGTGGTGAATGCATAGTAGTGATAGTACCACACAAGAGGATGCCTGACAAAGTGCAGATCTCGCATTATGGGTTGAAATATGATACGTCTAACCGGTTGGTTGTGATGGTTTGTGATTCAGGTATTGTGACGGTGATGAAGGACAAGGTTCAACGTTCATTGGCAAGCTTTTCCGGCGTCAAAGTTCATCAAGCACATTTTATAAAAGAACCAAAATTTTCGTGCGTACAAGATGAGAAGCTCCAATGTGTTCAGATTTACGATGGATGTCAATGGAGGAAATATGGGCAAAAAATATCCAAGGATAATCCATGTCCTCGTGCCTACTATCGTTGCACCATGGCACTAGGATGTCCGGTTCGTAAACAGCCACGGGACACCTCTTCTTTTCCATTGCATGCAACTACTTTTCCTCAGCTACCAGGCCACCCTATCATCTTCCCTCACAAATTGCAACATTCACTAGGGCAAAAACAACCTTCCTTTATGACAGATATCATGACTGCAGCTGTTGCTTCCAATCCAAATTTCATTGTAGCATTAGCAGCAACTATCTCGTCAATTATTGGAGCTCCTAGAAGCAATGATGGAAATAATAGCTACAGTAACAATGGTGGAAATGTTCGGACATCTATGTTTCCTAGATCCACTTAA 1263 0.4481 MTTTIEQRRRTSCVHALSVEEKKEEKARWNRFEEEKTQLRKEVIDEENMQKKNKMICIQLHHKRIQLRCCEEDGHAVVFGYSTSVSGYVVMKNKNTQLYSLHDEEDEHGAAYSVMSSRIRYSRRWLYSVTMLVDVGILAIFVRWTTVDDAALEGVSWKPEGGGRNDREISVVVNDAPTTKVFVTMEDVVRGGGRCSAHHMEVDGGECIVVIVPHKRMPDKVQISHYGLKYDTSNRLVVMVCDSGIVTVMKDKVQRSLASFSGVKVHQAHFIKEPKFSCVQDEKLQCVQIYDGCQWRKYGQKISKDNPCPRAYYRCTMALGCPVRKQPRDTSSFPLHATTFPQLPGHPIIFPHKLQHSLGQKQPSFMTDIMTAAVASNPNFIVALAATISSIIGAPRSNDGNNSYSNNGGNVRTSMFPRST 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00065 420 MobiDBLite consensus disorder prediction 396 420 - -
Vimu8g00065 420 SUPERFAMILY WRKY DNA-binding domain 287 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g00065 420 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 289 326 IPR044810 GO:0003700
Vimu8g00065 420 Gene3D WRKY domain 278 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu8g00065 420 ProSiteProfiles WRKY domain profile. 291 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g00065 420 Coils Coil 22 42 - -
Vimu8g00065 420 SMART WRKY_cls 289 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu8g00065 420 Pfam WRKY DNA -binding domain 291 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00065 Vimu-Chr8 3581947 3583822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00065 283 402 WRKY Transcription Factor Family AT1G68150 39.669 1.04e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu8g00065 WRKY 3.5e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00065 - - vra:106754840 158.688