Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00063 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTCTACAAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGGTGAGGAACTCACACAGTGGTCCTTCTACAGGGCCTTGATTGCTGAGTTCATTGCCACACTTCTCTTCCTTTACATCACAGTGCTTACTGTTATTGGTTACAAGAGCCAGAGTGATGTAAACGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACTTTTGGACTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGTTTGGGGGCCATATGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGGCTTACTACCACAGGTATGGTGGTGGGGCCAATGAGTTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCAGAGATAATTGGAACATTCGTTTTGGTGTACACTGTCTTCTCTGCTACAGACCCCAAGAGGAATGCTAGAGATTCTCATGTCCCGTTCTTGTCCTCAGAACAAGAAAGTGGGAATTCTTTTCCTGTGGGCATATTTCTTGACTTAAAGGTTTTGGCTCCACTTCCAATTGGTTTTGCTGTGTTCATGGTCCACTTGGCAACCATCCCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATATACAACAAAGAGAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACCATTTGA 921 0.481 MAKHDVEGGSFSTKDYHDPPPAPLIDGEELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVNAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYHRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPFLSSEQESGNSFPVGIFLDLKVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKEKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00063 306 Pfam Major intrinsic protein 222 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 Pfam Major intrinsic protein 29 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 Gene3D Glycerol uptake facilitator protein. 22 306 IPR023271 -
Vimu8g00063 306 CDD MIP 37 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 MobiDBLite consensus disorder prediction 1 20 - -
Vimu8g00063 306 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vimu8g00063 306 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 300 IPR034294 -
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu8g00063 306 SUPERFAMILY Aquaporin-like 33 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00063 Vimu-Chr8 3511258 3514450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00063 1 302 Major Intrinsic Protein MIP AT2G37170 79.538 3.41e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00063 K09872 - gmx:547857 547.74