Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00055 ATGTCAAACAGGGAATGTTTATTTGCCATAAACATGGACGAGGATCAAGAGATGGAGAAATTTGGAATGGAGAATGATTATGAGGGTGGTCAATGGATTGGTGGTGAATTCTACTACAAGAGTCGTAAGGAAAAGCGCACTCAGACAAAGGATGATGTTCTTTACGGGGTTTTTGCAGATTCTGATGACGATGATGATTATTCAAGTAGAAAACGGAGGAAGGACCGTGATTTTTCAAAGAAGCAAGATCTAACCAAGCCTGTGAATTTTGTGTCTACTGGAATGTTTATGCCCAATCAGGAAATTGATAATAAGTCCAAAGAGCAGAATGAGAAAGATGGTTATGTTAGTGAGGATAGGCCGGGCTTAGGGTCAGCTTTTGGTATGGGGTCTGGTGGCACTTCTGGGTCTGGTCTAGGTTTTAATTCTGGCAATACAGCAAATGGTTCAGAAAGAAATGATGATTCTGATGAGAACGGTCATGATAATTTCTTGCCCTCAGCATTCGGGAAGAAGATTAAGGAGGGGGCGATGAGAAGGGAAAGGGAAAGGGAGAAGGAGAGGTTGGAGAAGAAGAGGGGGAAGCATCAGAGTTCAGTTCAAGATGGGTTTAGTGATGTGGGTAAGTTTGAGAAGCATACGAAAGGGATAGGTATGAAGTTGTTGGAGAAGATGGGTTATAAAGGAGGTGGGCTTGGGAAGAATGAGCAGGGTATTGTGGCTCCTATTGAGGCGAGATTGAGGGCCAAGAATTCTGGCATAGGGTTTAATGAGTCTAAAGAGACTTTGCCATTGCCGGTTTTGCAGCAAGAGAAGAAGAATGTGCAAGAGGTCTCACAACCTGTGGTTAGCAAAACAAAGGAACGGTTATGGTCAAAGCAAGCAAGGTTAAAGAAAAAGAAGGAGGAAGAGTATGTAACAGCTGAGGAGTTGTTGGCAAGCAAGCAAGAACAAGAGTTTGAGGTTGTTCAGAAGGTATATGATATGAGAGGGCCACATGCTAGAGTAATAAATTTGTCTGATTTGAATGCCGAGGAGAAAGCAAAAGAAAATGATATCCCAATGCCAGAACTTCAGTATAATGTAGCATTAATAGTTGGGTTGGCTGAGGCTGACATCCAACAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACGGCACTTAGCTTGAAAAAAGAAAAAGAGAAGTTAGAAACTGAGGCAGCGTTCCAGAAGAAGCAGCTGGATAATATGGAGGAAATAAAGCGTGTGTTAGACCATGTTGAAGAAGAAAACACTTTGGGAACATTAACATTGGATTCCCTTGCTCATTGCTTTAGGGATTTACACAAAAGATATGCTGATGACTACAAGTTGTGTAACTTGTCATGCATTGCTTGTTTTTATGCTCTACCCCTGTTTATCAGAGTGTTCCAAGGTTGGGATCCTCTGCGAAATCCATCTCATGGGTTGGAGTTGGTTTCAGAGTGGAAGGCATTGCTTCGAGAAGAAGATTCAGTTGATATATGGGATGTATCATCACCTTATACCCAATTGGTTTTAGAGGTTGTATTGCCAGCTGTAAGAATATCTGGTATAAATACCTGGCAGGCCCGGGATCCTGAACCAATGTTATGGTTTCTGGAATTGTGGGAAAAGTTACTTCCTCAATCAGTCCTTGCCACCATATTAGACAATATAGTTATGCCTAAACTATCAAGTGCTGTAGATACTTGGGAACCACACCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGCTACCGCTGTTGGGTCACAAGTTGGAGGGTATTTACCAGGTGATTCGTTTTAAATTGAGTACTGTTCTTGGTGCCTGGCACCCAAGTGATGGTTCTGCTTTTGCTATATTGTCTCCTTGGAAGTCTGTATTTGATTCTGCTAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTACAGCTTGTCTTGCAAGATTTCCAAGTGAACCCAGCAAGTCAGAATCTTGATCAATTTTATTGGGTAATGAACTGGGCTTCTGCTATTCCTATTCACCTAATGGTTGATATGATGGAGAAATTCTTCTTTGCTAAATGGCTTCAGGTTCTGTATCATTGGCTGTGCTCAAATCCTAATTTTGAAGAAGTTACAAAATGGTATTTAGGATGGAAGGAACTCATTCCAAAAGAACTGTTAGCAAATGAAAGCATCCGATACCAACTTAATCGCGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTGGTCCAACCTGGTTTAAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAGAGGCAATTTGAGGCTCAACAGAAAGCAGCAGCTTATGCTCAACAGCAAGCTGCGGCTAGCTTGGGCGGTGCAGTCAACGCAGATGGCACTCATGAATTGAGCTTGAAAGAAGTCATTGAGGCTCATGCTCAGCAACATGGTTTGCTATTCAAGCTTAAACCTGGTAGAATGCACAATGGTCATCAAATATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTTAATCAAAAAGTATACGCCCAGAACGAAGAAATGTGGTCTATGGAATCTCTTCAGGGCTTGCTAGAGTTGCATAATAAATCCCTTAGTAAAAGGCGTTGA 2637 0.419 MSNRECLFAINMDEDQEMEKFGMENDYEGGQWIGGEFYYKSRKEKRTQTKDDVLYGVFADSDDDDDYSSRKRRKDRDFSKKQDLTKPVNFVSTGMFMPNQEIDNKSKEQNEKDGYVSEDRPGLGSAFGMGSGGTSGSGLGFNSGNTANGSERNDDSDENGHDNFLPSAFGKKIKEGAMRREREREKERLEKKRGKHQSSVQDGFSDVGKFEKHTKGIGMKLLEKMGYKGGGLGKNEQGIVAPIEARLRAKNSGIGFNESKETLPLPVLQQEKKNVQEVSQPVVSKTKERLWSKQARLKKKKEEEYVTAEELLASKQEQEFEVVQKVYDMRGPHARVINLSDLNAEEKAKENDIPMPELQYNVALIVGLAEADIQQIDRDLRRERETALSLKKEKEKLETEAAFQKKQLDNMEEIKRVLDHVEEENTLGTLTLDSLAHCFRDLHKRYADDYKLCNLSCIACFYALPLFIRVFQGWDPLRNPSHGLELVSEWKALLREEDSVDIWDVSSPYTQLVLEVVLPAVRISGINTWQARDPEPMLWFLELWEKLLPQSVLATILDNIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAFAILSPWKSVFDSASWEQLMLRFIVPKLQLVLQDFQVNPASQNLDQFYWVMNWASAIPIHLMVDMMEKFFFAKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAAYAQQQAAASLGGAVNADGTHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEEMWSMESLQGLLELHNKSLSKRR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00055 878 Coils Coil 373 424 - -
Vimu8g00055 878 ProSiteProfiles G-patch domain profile. 214 259 IPR000467 GO:0003676
Vimu8g00055 878 Coils Coil 298 318 - -
Vimu8g00055 878 MobiDBLite consensus disorder prediction 63 83 - -
Vimu8g00055 878 Pfam Tuftelin interacting protein N terminal 15 113 IPR022159 -
Vimu8g00055 878 MobiDBLite consensus disorder prediction 58 203 - -
Vimu8g00055 878 MobiDBLite consensus disorder prediction 85 103 - -
Vimu8g00055 878 Coils Coil 179 199 - -
Vimu8g00055 878 MobiDBLite consensus disorder prediction 173 199 - -
Vimu8g00055 878 MobiDBLite consensus disorder prediction 130 150 - -
Vimu8g00055 878 PIRSF TFIP11 12 873 IPR024933 -
Vimu8g00055 878 Pfam GC-rich sequence DNA-binding factor-like protein 432 699 IPR022783 -
Vimu8g00055 878 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 12 865 IPR045211 GO:0000390
Vimu8g00055 878 SMART G-patch_5 212 257 IPR000467 GO:0003676
Vimu8g00055 878 MobiDBLite consensus disorder prediction 104 118 - -
Vimu8g00055 878 Pfam G-patch domain 214 255 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00055 214 258 C2H2 Transcription Factor Family AT5G26610 48.889 3.12e-07 51.2