Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00046 ATGGAAATTCAGTTCCAACATCCAAAGCAACAGTTGAGACAAAAAGGGAGAAAGAACAAAAGCAAGAACAAGTATGTTGGAGTGAGGCAAAGGGCATCAGGGAAATGGGTTGCAGAGATCAAAGAAACAACACAGAAGATAAGAATGTGGCTTGGCACGTACGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGAACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCAAGGATTCAGAACCTTCTCAGCAACAGAAAAGGCATCAAAGAACAAGAACAACATGTGGAAACATGTCCCACCCTACAATATGAGGAACCAAAGTTCCAATCTTCGCTGGAACAAGTGTCTATATTCAGTGTTCTCCAACAAGATTTTTGCCAAAAGAAGACATGTGTGAGAGATCAGAAGAAAAAAAGGGTTACCAGCACAGTAAGTAGTGGTAGTAGTACTGAGACAAGCAATAGTGACACTAGTGAGAACTCACTTTGTAGTGAGACAAAAACCCAGAACACAGAACTGTTTGATGATGATTATAGACCTGATTTCAGCAATTTCATGGGGTCTGAATCAGGTTCTGGGGAAAATCCTTCATGGGGTTGTGAACTTTTTTGTGATGATTTTCCCTTTGGCCAAGTAATGGATGTAGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGAACACTGTTCAGGACTCTAATATCACTGATGCTATCTGGAATCTTCCTCCCTTGTGCTCTTTTTTGTGTTAA 876 0.4224 MEIQFQHPKQQLRQKGRKNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQNLLSNRKGIKEQEQHVETCPTLQYEEPKFQSSLEQVSIFSVLQQDFCQKKTCVRDQKKKRVTSTVSSGSSTETSNSDTSENSLCSETKTQNTELFDDDYRPDFSNFMGSESGSGENPSWGCELFCDDFPFGQVMDVANLPDIAGLELPEFERMKVERQISASLYAMNGVQEYMNTVQDSNITDAIWNLPPLCSFLC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00046 291 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Vimu8g00046 291 MobiDBLite consensus disorder prediction 11 25 - -
Vimu8g00046 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 254 - -
Vimu8g00046 291 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Vimu8g00046 291 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vimu8g00046 291 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vimu8g00046 291 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vimu8g00046 291 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vimu8g00046 291 MobiDBLite consensus disorder prediction 1 25 - -
Vimu8g00046 291 CDD AP2 24 80 IPR001471 GO:0003700|GO:0006355
Vimu8g00046 291 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vimu8g00046 291 MobiDBLite consensus disorder prediction 158 182 - -
Vimu8g00046 291 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00046 Vimu-Chr8 3213468 3214343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00046 8 98 AP2-EREBP Transcription Factor Family AT5G19790 71.429 2.80e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu8g00046 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00046 K09286 - gmx:100792432 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03432 6 31099301 31100568 Vimu8g00046 8 3213468 3214343 PCT