Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00022 ATGCTTCACTACGACCGGTCTCCAAACCTCAGCCTTGTAATGGAGCATAGATTGAGGTTTAGGGAAGAGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTGAAACCACAAGTCCTAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGTTACTGCCCTCTGCAGAATTTTTCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTATCAGCACCAAGGACAAAACACACTCTACGCACTTGGTCACATAATTTCAGCACTCAAGTGTTGAGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGCAAGAAGTGAAAGTGGAGATTGTGGTTAGGAAGGAGAAACTGGGGGAGTATTGTAATGAGGGTGAAGTGAACAATAGTAGTAATAATAATAATGGCCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCAAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCTATCTACTCAGAAGTAG 744 0.4624 MLHYDRSPNLSLVMEHRLRFREEDFGMEWLSVFVEDCFSSKPSCLLAPPGVETTSPSTKPSSTMQRPQQSYCPLQNFSVPGKARSKRKRLSAPRTKHTLRTWSHNFSTQVLSSDPPLLKQAYWLADSELIVPKKKDEQEVKVEIVVRKEKLGEYCNEGEVNNSSNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVLSTQK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00022 247 ProSiteProfiles GATA-type zinc finger domain profile. 175 207 IPR000679 GO:0006355|GO:0043565
Vimu8g00022 247 FunFam GATA transcription factor 165 247 - -
Vimu8g00022 247 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 235 - -
Vimu8g00022 247 PANTHER GATA TRANSCRIPTION FACTOR 22 244 - -
Vimu8g00022 247 SMART GATA_3 171 225 IPR000679 GO:0006355|GO:0043565
Vimu8g00022 247 Gene3D - 167 247 IPR013088 GO:0006355|GO:0008270
Vimu8g00022 247 CDD ZnF_GATA 176 223 IPR000679 GO:0006355|GO:0043565
Vimu8g00022 247 MobiDBLite consensus disorder prediction 49 69 - -
Vimu8g00022 247 Pfam GATA zinc finger 177 211 IPR000679 GO:0006355|GO:0043565
Vimu8g00022 247 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
Vimu8g00022 247 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00022 Vimu-Chr8 2308852 2312656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00022 27 239 C2C2-Gata Transcription Factor Family AT4G32890 40.000 3.93e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu8g00022 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00022 - - pvu:PHAVU_004G079200g 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03461 6 31369478 31370418 Vimu8g00022 8 2308852 2312656 PCT