Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04241 AGCCAATGTTTTCCAAGTGTTGTAGCCAATGTAGAGCTCGCAAAGCGTGATGAGGGTTCCAAGCTCCGGAGGGATGTTTCTTGTGAGCTTGTTGCCAGAGACGGCGAGGTACTGGAGGTGCTGTTCATTGACATGGCAGTGGAATATGAAGTTGAGCATCTAAGGAAGGCTTACGGATGGGCAGCTAGGGATTCATCTGGTCTTCTCTCCCCATTTTTCTTCTCCAGAAGAAAAACAGGAGAAAAAGATGTGACATTCAAGGTGTTGTACTGTGGAATATGTCATTCCGACCTTCACAAGTTGAAGAATGATTGGAATGATTCAATTTATCCACTTGTTCCTGGGCGTGAGATTGTTGGAGAAGTAATGGAGGTGGGAAGCAAAGTAGAAAAATTTAAGATTGGAGACAAGGTTGCAGTGGGATGTTTGGTTGGGTCTTGTTCCTCATGCCAAAATTGTGTCAACAATCTTGAGAATTACTGCCAACAAGCGATTCACACATTTGGTTCCAAGTATGTGGATGGTAGCATCACATATGGGGGTTTCTCTGACTTTATGGTTGCAGATGAGCACTTTCTTGTCAACATTCCAAATGGCCTACCTCTTGATGCTGCTGCACCTCTCCTTTGTGCAGGGATCACAGTCTATTCACCTTTGAGATATTTTGGCCTTGACAAACCTGGTATGCACATTGGAGTGGTTGGCCTTGGTGGATTGGGCCATCTAGCTGTGAAGTTTGCAAAAGCCCTTGGCTTGAAAGTCACTGTCATTAGTACCTCTCCTAGTAAGGAACAAGAAGCCATTCAACATCTGGGAGCATATTACTTTGCTGCAAATTGCACCTTGGATGGTACAATCGACACTGTTTTTGCGGTTCATCCTCTAATGCCTTTGATTGATCTTTTGAAGTCTCATGGAAAGCTACCAAATTTTAAGTTTTATAATTCCATATTATTGGCAGGGAGAAAAAGTATAGCGGGTAGTTACTTTGGAGGAATAAAGGAGACACAAGAAATGATTGATTTCGCAGCAGAACACAATGTTAGACCAGAAATTGAGGTAATTCCAATGGATTATGTTAACACTGCAATGGAGCGTCTACTCAAAGCTGACGTTAAATATCGTTTTGTGATTGATGTTGGTAATACACTGAAGCCCTACCCTTCTACTACTTTGGACTGA 1182 0.4264 SQCFPSVVANVELAKRDEGSKLRRDVSCELVARDGEVLEVLFIDMAVEYEVEHLRKAYGWAARDSSGLLSPFFFSRRKTGEKDVTFKVLYCGICHSDLHKLKNDWNDSIYPLVPGREIVGEVMEVGSKVEKFKIGDKVAVGCLVGSCSSCQNCVNNLENYCQQAIHTFGSKYVDGSITYGGFSDFMVADEHFLVNIPNGLPLDAAAPLLCAGITVYSPLRYFGLDKPGMHIGVVGLGGLGHLAVKFAKALGLKVTVISTSPSKEQEAIQHLGAYYFAANCTLDGTIDTVFAVHPLMPLIDLLKSHGKLPNFKFYNSILLAGRKSIAGSYFGGIKETQEMIDFAAEHNVRPEIEVIPMDYVNTAMERLLKADVKYRFVIDVGNTLKPYPSTTLD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04241 393 FunFam Cinnamyl alcohol dehydrogenase 211 350 - -
Vimu7g04241 393 Gene3D - 60 380 - -
Vimu7g04241 393 Pfam Alcohol dehydrogenase GroES-like domain 82 195 IPR013154 -
Vimu7g04241 393 FunFam Uncharacterized protein 60 210 - -
Vimu7g04241 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 200 348 IPR036291 -
Vimu7g04241 393 CDD CAD1 59 379 IPR047109 GO:0016616
Vimu7g04241 393 PANTHER ALDEHYDE REDUCTASE 50 383 IPR047109 GO:0016616
Vimu7g04241 393 SMART PKS_ER_names_mod 67 378 IPR020843 GO:0016491
Vimu7g04241 393 Gene3D - 211 350 - -
Vimu7g04241 393 FunFam Putative cinnamyl alcohol dehydrogenase 6 351 380 - -
Vimu7g04241 393 SUPERFAMILY GroES-like 69 228 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04241 Vimu-Chr7 41082604 41098775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04241 55 389 Monolignol Biosynthesis Gene Families AT4G37990 63.068 5.70e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04241 K23232 - gmx:100812491 580.096