Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04236 ATGGCAATCCCTTCCCCTTTCCTCTTCCTTCTCACAGCTATCTTCATGTTGCTTTACCTCTCTCTCCTCACTCACTCCGTCAACCCTGACTTCCATCCTCTAATGTCGTTCAAAGCCGCTTCCGACCCTTCCGACACACTCGCCCAGTGGAACTCCAAAACCTCAGACCCCTGTACTTGGTACGGTGTCTCTTGTCTCCGTAACCGTGTCTCTCGCCTCGTTCTTCAAGACCTAAACCTCACAGGCTCCATCCACCCCCTAACTTCTCTCACCCAACTTCGCATCCTCAGCCTAAAACGCAACGGTTTCAACGGCCCCATCACCTCTCTCGCCAACCTCACCGCCCTCCGCCTTCTCTTCCTCTCCCACAACAACTTCTCCGGTCCCTTCCCCGCCACGCTCACCTCTCTCTACCGCCTTGATCTCTCACACAACAGTCTCTCCGGCGAAATCCCCGCCACTTTCAACCGCTGGACCCACCTCCTCACCCTCCGCCTCGACTCCAACCGTTTCCGCGGCCGCATTCCCAGCAACATCAACCTCTCTCGTCTTCAAGACTTTAACGTCTCAAACAACCTCCTAACGGGTCAAATACCCGAATCTCTCTCGGGTTTCCCTGGATCCGCGTTTTCTCACAACCCCTCCCTCTGCGGAGCTCCCTTGCAAGAATGCATAGCCAAAGGCGGGGCAATCATCCCGGCCCTGGCTTCCCCATTGAAGCCGCGAAACGACACTGTTATTTCCAAACCCCGGGGGCGGGAGAGAATAATGGGGGTGTTGGTCTTGGTGGGTATTGTGGTGGGGGACGTGCTGGTGCTGGGTTTGGTGTCGCTGCTTCTCTACTGCTATTTCTGGAGGAACTACTCTGCTGCTGCACAGTTGAGAAAAGAGGAAAAAGAGAGGAGTATGAAGATGGTGGATGAGTATAAGGGTGGAGGAATGGTGTTTTTGGAAGGGGTGAGGAGGTTTGAGTTAGAGGAGCTGTTGCGTTCGTCGGCGGAGTTGTTGGGAAAGGGTGCGTTGGGGAGTGCCTATAAAGCGGTGCTTGACGACGGAACTGTGGTGGCGGTGAAGAGGCTGAAGGAGGTTAGTGTTGGAGGGAAGAAGGAGTTCCATCAACGAATGGAAGTGCTTGGAAGTTTGAGACACTCAAACGTTGTGAGTTTGAGGGCTTACTGTTTCACAAAAGACGACAAATTCCTCGTCTCTGATTACATGTGCAACGCTAGCTTCTCATTCCTTCTCCACGGGCGGACCCCACTAGACTGGACAACGAGGTTGAAGATCGCAGCTGGTGCGGCACGAGGCGTGGCATTCATTCACAAACATAAACTCACCCATGGAAACATCAAAGCCACCAATGTTCTTATCGACGTGGCGGGCAACGCGCGCGTCGCGGACTTTGGTCTCTCCATCTTCGCTGGCGCCTCCATTCTAAGATCCAACGGCTACCGAGCACCAGAGGTATCGGACGGTCGCAAGCAGACACAGATGTCTGACGTGTACTCCTTTGGCGTCTTATTGATAGAGATGCTGACGGGGAAGTGCCCCTCCACCGTGGCGGATCTCCCGAGGTGGGTCCGGTCAGTTGGGAGAGAGGAATGGACGGCCGAGGTATTCGATTTAGAACTGATGAGCTATAAGGACATTGAGGAGGAGATGGTGGCGCTGCTACAGATAGCTATCGAGTGCACTGAGACCGAACCTCATCAACGGCTCAGGATGAGCCACGTGGTGAAGATGATTGAGGAATTGCGTAGGGTCCACATGTTGCCGTGTGATGAAGGGTTGGAATCGCTGTCTGGGTCACTCTCGATCCCTGAAGCAAGTGCAAGTCAATGA 1842 0.5413 MAIPSPFLFLLTAIFMLLYLSLLTHSVNPDFHPLMSFKAASDPSDTLAQWNSKTSDPCTWYGVSCLRNRVSRLVLQDLNLTGSIHPLTSLTQLRILSLKRNGFNGPITSLANLTALRLLFLSHNNFSGPFPATLTSLYRLDLSHNSLSGEIPATFNRWTHLLTLRLDSNRFRGRIPSNINLSRLQDFNVSNNLLTGQIPESLSGFPGSAFSHNPSLCGAPLQECIAKGGAIIPALASPLKPRNDTVISKPRGRERIMGVLVLVGIVVGDVLVLGLVSLLLYCYFWRNYSAAAQLRKEEKERSMKMVDEYKGGGMVFLEGVRRFELEELLRSSAELLGKGALGSAYKAVLDDGTVVAVKRLKEVSVGGKKEFHQRMEVLGSLRHSNVVSLRAYCFTKDDKFLVSDYMCNASFSFLLHGRTPLDWTTRLKIAAGAARGVAFIHKHKLTHGNIKATNVLIDVAGNARVADFGLSIFAGASILRSNGYRAPEVSDGRKQTQMSDVYSFGVLLIEMLTGKCPSTVADLPRWVRSVGREEWTAEVFDLELMSYKDIEEEMVALLQIAIECTETEPHQRLRMSHVVKMIEELRRVHMLPCDEGLESLSGSLSIPEASASQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04236 613 ProSiteProfiles Protein kinase domain profile. 330 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04236 613 Gene3D Transferase(Phosphotransferase) domain 1 406 593 - -
Vimu7g04236 613 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 587 IPR046959 -
Vimu7g04236 613 SUPERFAMILY L domain-like 36 221 - -
Vimu7g04236 613 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Vimu7g04236 613 Pfam Protein kinase domain 333 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04236 613 SUPERFAMILY Protein kinase-like (PK-like) 333 582 IPR011009 -
Vimu7g04236 613 Gene3D Ribonuclease Inhibitor 33 135 IPR032675 -
Vimu7g04236 613 Gene3D Phosphorylase Kinase; domain 1 296 405 - -
Vimu7g04236 613 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04236 Vimu-Chr7 41030581 41035378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04236 30 608 Receptor kinase-like Gene Family AT1G68400 57.098 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu7g04236 Pkinase 7.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04236 - - vun:114168386 1025