Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04235 ATGAGTAGCAATGGCGAAACTTGTAGTGGCAGTCTCGACATTAGGGCTTTAATTTGTCACGCTGCTGCTGGTGCCTCTGCAGGGACAATAGCGGCTACATTTGTATGCCCGTTGGATGTGATCAAGACTAGGCTACAAGTCCATGGCCTTCCCCAAGGGCAGAAAGGTAATGTCATTGTCACAAGCTTGCAAAATATAGTAAGGAACGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCGACGATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCTATTAAAAGACCTGCTTCGTTCACGCGATGGTTCCAAGGAACTCACAACTTTTGGACATATGACAGCTGCTGCGGCTGCTGGGGCAGCAACAGCAGTTTCTGTAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGGCCCGATGTTGTTCCTTACAAGAGTGTTCTGTCTGCTCTGACAAGGATTACACGTGAGGAAGGCATAAGAGGCCTATATAGTGGGATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAATTTCCAGCATTTGAAAGGATCAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGAAGTGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTATCCACATGAGGTAATACGATCCCGGCTGCAAGAGCAAGGGCAGGCCAAAAATAACGGGATACAATATACAGGGGTTATTGACTGTACCAAGAAGTTGTTTCAAAAGGAAGGCATTGCTGGGTTTTATCGTGGTTGTGCAACGAATCTTTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACAAAGGTTTTTGCAGCGAGTTGTACCACAGGATAAAGGGTATCCACAAGGCTCTTCTAAACCCAATGAACTGAACAAAGCTCAGTCAAAAGCAGAAGCCAGTGACACTGATAGGGGTCAACCACCGTCTCAGTCTAACATGAAAGCTTCGTCTATTCCTCTTGGAAACAAAGAGCAGCTAACACGACATTGA 1092 0.4396 MSSNGETCSGSLDIRALICHAAAGASAGTIAATFVCPLDVIKTRLQVHGLPQGQKGNVIVTSLQNIVRNEGFRGMYRGLSPTILALLPNWAVYFTSYELLKDLLRSRDGSKELTTFGHMTAAAAAGAATAVSVNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAFERIKSYMAEKDNTTVDKLSPGSVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKNNGIQYTGVIDCTKKLFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIQRFLQRVVPQDKGYPQGSSKPNELNKAQSKAEASDTDRGQPPSQSNMKASSIPLGNKEQLTRH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04235 363 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Vimu7g04235 363 Pfam Mitochondrial carrier protein 20 106 IPR018108 -
Vimu7g04235 363 Pfam Mitochondrial carrier protein 213 306 IPR018108 -
Vimu7g04235 363 Gene3D Mitochondrial carrier domain 13 304 IPR023395 -
Vimu7g04235 363 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Vimu7g04235 363 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Vimu7g04235 363 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vimu7g04235 363 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vimu7g04235 363 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vimu7g04235 363 MobiDBLite consensus disorder prediction 311 363 - -
Vimu7g04235 363 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 16 304 - -
Vimu7g04235 363 SUPERFAMILY Mitochondrial carrier 18 299 IPR023395 -
Vimu7g04235 363 MobiDBLite consensus disorder prediction 315 363 - -
Vimu7g04235 363 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 18 309 IPR044712 GO:0006862|GO:0055085
Vimu7g04235 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Vimu7g04235 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Vimu7g04235 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04235 Vimu-Chr7 40978207 40982505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04235 1 357 Chloroplast and Mitochondria Gene Families AT1G25380 61.918 3.43e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04235 K15115 - gmx:100797064 606.675