LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g04235	ATGAGTAGCAATGGCGAAACTTGTAGTGGCAGTCTCGACATTAGGGCTTTAATTTGTCACGCTGCTGCTGGTGCCTCTGCAGGGACAATAGCGGCTACATTTGTATGCCCGTTGGATGTGATCAAGACTAGGCTACAAGTCCATGGCCTTCCCCAAGGGCAGAAAGGTAATGTCATTGTCACAAGCTTGCAAAATATAGTAAGGAACGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCGACGATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCTATTAAAAGACCTGCTTCGTTCACGCGATGGTTCCAAGGAACTCACAACTTTTGGACATATGACAGCTGCTGCGGCTGCTGGGGCAGCAACAGCAGTTTCTGTAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGGCCCGATGTTGTTCCTTACAAGAGTGTTCTGTCTGCTCTGACAAGGATTACACGTGAGGAAGGCATAAGAGGCCTATATAGTGGGATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAATTTCCAGCATTTGAAAGGATCAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGAAGTGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTATCCACATGAGGTAATACGATCCCGGCTGCAAGAGCAAGGGCAGGCCAAAAATAACGGGATACAATATACAGGGGTTATTGACTGTACCAAGAAGTTGTTTCAAAAGGAAGGCATTGCTGGGTTTTATCGTGGTTGTGCAACGAATCTTTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACAAAGGTTTTTGCAGCGAGTTGTACCACAGGATAAAGGGTATCCACAAGGCTCTTCTAAACCCAATGAACTGAACAAAGCTCAGTCAAAAGCAGAAGCCAGTGACACTGATAGGGGTCAACCACCGTCTCAGTCTAACATGAAAGCTTCGTCTATTCCTCTTGGAAACAAAGAGCAGCTAACACGACATTGA	1092	0.4396	MSSNGETCSGSLDIRALICHAAAGASAGTIAATFVCPLDVIKTRLQVHGLPQGQKGNVIVTSLQNIVRNEGFRGMYRGLSPTILALLPNWAVYFTSYELLKDLLRSRDGSKELTTFGHMTAAAAAGAATAVSVNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAFERIKSYMAEKDNTTVDKLSPGSVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKNNGIQYTGVIDCTKKLFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIQRFLQRVVPQDKGYPQGSSKPNELNKAQSKAEASDTDRGQPPSQSNMKASSIPLGNKEQLTRH	363

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g04235	363	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Vimu7g04235	363	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Vimu7g04235	363	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Vimu7g04235	363	Gene3D	Mitochondrial carrier domain	13	304	IPR023395	-
	Vimu7g04235	363	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Vimu7g04235	363	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Vimu7g04235	363	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Vimu7g04235	363	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Vimu7g04235	363	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Vimu7g04235	363	MobiDBLite	consensus disorder prediction	311	363	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g04235	Vimu-Chr7	40978207	40982505	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g04235	1	357	Chloroplast and Mitochondria Gene Families	AT1G25380	61.918	3.43e-148	421

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g04235	K15115		-	gmx:100797064	606.675

Showing 1 to 1 of 1 entries