Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04234 ATGTTTGGTTCCGTCTTTTGCTTTCATTTTCTAGTCTCTTGTTTCATGCTTCCTGTCTTGCTTGCTGCAGCTCCATGGGAACAATACCCAGCAGAAGATTGTCCTTCTTCTCCTCAACCATGTGGCTATCTGGGCACTATCTTCCCCCCCTTCACAACAACCCAAGATCCAAAATGTGGGTTGCCAATAAGTGGCTGTGACGACGACAGTAAAGTCAAACAAATCTCACTCACAGACCAACAATGGTATAAAATTGATGCCATAATAAATCCAACTTTGGACCCCAATGACCTTTCCATTTTCATCCATTACCCAGATTTTGACACCATTCTTCCAGAGCAGCCTAGGCAGCCTTTTGAGATAGATAAAAGGTATTTCAAGATCGATAACAATATTACCTTCTTTGGATGCCTTCGCAACACCGAAAACAAAATTTCAACTCCTCCAAACATGTTTTTATACAGACACTGTAAAAACATGTTTTTATACCACGACATGTACTATAGTTCTTCCCAACCTGTGGACTATCCAATGCCCAACATTCCATTCGCATGCTTGCTTTTTCAGGTTTCTCAACCTGGATCCTTTTGCAATTGCCCTTCATTTAAACTTTTATTTTCTATTCTCCAAATTAAATTAAACGTGCCCAAAAATTGCAAACCCTGTCCGCATGGCCCGTGTAAGTTGAAGTTAGAAGGACAACGCCTCAATTGTGACCCACCCAGTGATTATGGACAACCACCTCGTCTTTCATGGCCCCTGGTTTCTCCACCTCCAACGGCCAAGGCTAAGAAACTGGGTACTGTCACGCTGTTATACAGAGGTCGTTCCTATTTAACGCGCTTTCCTCGCCCTTTTTCTGCAGCTTTATGTGTTGGAATACCAGTCCTGGTTGGGGTTTTTGCCTTGGTTGTTGTTATTCTTTTGTTGTTGAAAGGAAGAAAGAAACGTTCAGGCCTCCAAAACAAATCAAGAAGCGCTTATTCTTCTTCCTTCAGAAATGCAACGTCCATGGAAAGTGGAGGTGTCTACTTTGGGATCTCTGTCTTCTCCTTCGACGAGCTCAGAGAGGCAACCAACAATTTTGATGAAGCTAGGAAGCTTGGAAAAGGAGGTTTTGGAACTGTGTACTTCGGAAAACTTAGAGATGGTCGTGAAGTTGCAGTGAAGCGCCTGTTCGAGCGCAGCTATAGGCCAGTGGAGTCATTCATCAATGAAATCCAGATCCTCACACGTCTGCGACATAGAAACCTTGTGTCCCTCTATGGCTGCACTTCGCGTCACAGCCGGGACTTACTGCTAGTGTACGAGCACATCCCAAATGGCACTGTTAGCTCTCATCTCCATGGTGATCAAGGAAATTCATGCTTTTTGCCATGGCATCTGAGAATGAAAATTGCCATACAAACTGCTAGTGCATTGGCTTATCTCCACGCTTCTGACACCATTCACAGGGACGTGAAAACCAACAATATTCTATTGGACAATGCGTTTGATGCTAAGGTTACGGATTTTGGTCTTTCAAGGCTGTTCCCTGATGATGTCACTCACGTTTCCACTGCTCCAAGAGGTACCCCTGGTTATGTTGATCCGGATTATCGCCTATGTTACCAGCTGACTACAAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTTGAGTTAATATCATCTCTCAAAGCAGTTGACATGAACAGGAACAGGGAAGACATTAAGTTGGCAAATCTTGCCATTAGGAAGATTCAAAAGGGTGCCTTTTCTGAGTTGGTTGATCCTTCCCTTGGTTTCCAATCAGATGAGAAACTAAAAATGATGATAGGTTCGGTGGCAGAGTTGGCTTTTCGGTGTCTGCAACAGGACAAGGAATTGAGACCCTCTATGGCTGAAGTATTGGAGGTGCTGGAGAGAATTCACAGTGGCAGGGATGAGCCACCGAATCAGGAGGGAATTGTCGTTAATGGTGCCATAAGGGCTTCTCAAAGCTATTCTCACCCACCTCTTCCAAACACTCTGATAAACCCACAAAAGCGCCTTTTCATAACAAACTGA 2049 0.4402 MFGSVFCFHFLVSCFMLPVLLAAAPWEQYPAEDCPSSPQPCGYLGTIFPPFTTTQDPKCGLPISGCDDDSKVKQISLTDQQWYKIDAIINPTLDPNDLSIFIHYPDFDTILPEQPRQPFEIDKRYFKIDNNITFFGCLRNTENKISTPPNMFLYRHCKNMFLYHDMYYSSSQPVDYPMPNIPFACLLFQVSQPGSFCNCPSFKLLFSILQIKLNVPKNCKPCPHGPCKLKLEGQRLNCDPPSDYGQPPRLSWPLVSPPPTAKAKKLGTVTLLYRGRSYLTRFPRPFSAALCVGIPVLVGVFALVVVILLLLKGRKKRSGLQNKSRSAYSSSFRNATSMESGGVYFGISVFSFDELREATNNFDEARKLGKGGFGTVYFGKLRDGREVAVKRLFERSYRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRDLLLVYEHIPNGTVSSHLHGDQGNSCFLPWHLRMKIAIQTASALAYLHASDTIHRDVKTNNILLDNAFDAKVTDFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMNRNREDIKLANLAIRKIQKGAFSELVDPSLGFQSDEKLKMMIGSVAELAFRCLQQDKELRPSMAEVLEVLERIHSGRDEPPNQEGIVVNGAIRASQSYSHPPLPNTLINPQKRLFITN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04234 682 SMART serkin_6 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04234 682 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Vimu7g04234 682 ProSiteProfiles Protein kinase domain profile. 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04234 682 FunFam Wall-associated receptor kinase-like 20 439 647 - -
Vimu7g04234 682 SUPERFAMILY Protein kinase-like (PK-like) 344 651 IPR011009 -
Vimu7g04234 682 Gene3D Transferase(Phosphotransferase) domain 1 439 643 - -
Vimu7g04234 682 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 669 IPR044652 GO:0004672
Vimu7g04234 682 Gene3D Phosphorylase Kinase; domain 1 335 438 - -
Vimu7g04234 682 Pfam Protein kinase domain 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04234 682 FunFam receptor-like protein kinase FERONIA 322 438 - -
Vimu7g04234 682 CDD STKc_IRAK 368 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04234 Vimu-Chr7 40968066 40970425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04234 283 645 Receptor kinase-like Gene Family AT1G25390 56.868 7.27e-133 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu7g04234 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04234 - - var:108334729 1182.93