Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04218 ATGAAACTGATTTGGCTAGTTGGTGTTGCTCCTGTATCATTAGGATGTTTGATAAGGGCCATGAGGGCTTGGTCTTGCCATTATGAAATTTATGGCCTGGAGGAAAACCGTGTTTCCTGTAGCAAACGTCGATGGAGACCAGAAAATAACCCTTTGGATCTCAACAACCTTCCCGATGACTACTCCAGAGATGGCAATCAACTCTTCCAAGACAATTTCTCTTCGGAAGGTTACCAGAGAAACAAAGACATATTGAGGGATGATGAGAGTGAGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAATCACAGGCTCTTGGGGGACACATGAACCGTCACCGACAAGGCTAG 360 0.45 MKLIWLVGVAPVSLGCLIRAMRAWSCHYEIYGLEENRVSCSKRRWRPENNPLDLNNLPDDYSRDGNQLFQDNFSSEGYQRNKDILRDDESEKVYECRFCSLKFCKSQALGGHMNRHRQG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04218 119 SUPERFAMILY beta-beta-alpha zinc fingers 90 117 IPR036236 -
Vimu7g04218 119 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 119 IPR013087 -
Vimu7g04218 119 PANTHER ZINC FINGER PROTEIN JAGGED 65 119 IPR045320 GO:0003700
Vimu7g04218 119 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vimu7g04218 119 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vimu7g04218 119 Gene3D Classic Zinc Finger 72 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04218 Vimu-Chr7 40813237 40819263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04218 48 118 C2H2 Transcription Factor Family AT1G13400 57.534 6.04e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g04218 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04218 - - vra:106776856 135.191