Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04211 ATGGAGCATAAGAGGAAGCTTAAGGAGGAATATGGTCAGAAACACATGATTTTTCAGATTTTGATTGGTAGAGTTGTTCAGCTGAAGTTAGGAGATGCTGTTTTTATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATAAAAGTTGCGCTGGATTTTGTGTCCCCTGAAAATGTTGGAGAGTGCTTTCGGTTGACAGAGGAATTTCGCACACTTCCAATAAATCACAAGTCCACAGAGGACAAATTGGAGTGGGAGGTGCGGATCGAAGCAAGTACTCAATGTTGCTCATTGAATCACGGGATCATGGGCCACATCAATCCTTTTGATCTTGTGATGCTTGAGTTCAACAATCCATTGTTGGCTAGGAAAATGACTGGACCCAACACGAAAAAGGCCCAAGACTCATCACCCTTTTTCTACTAG 438 0.4269 MEHKRKLKEEYGQKHMIFQILIGRVVQLKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHKSTEDKLEWEVRIEASTQCCSLNHGIMGHINPFDLVMLEFNNPLLARKMTGPNTKKAQDSSPFFY 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04211 145 ProSiteProfiles JmjC domain profile. 1 74 IPR003347 -
Vimu7g04211 145 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 98 IPR045109 GO:0032454|GO:0033169
Vimu7g04211 145 SUPERFAMILY Clavaminate synthase-like 24 94 - -
Vimu7g04211 145 Gene3D Cupin 1 83 - -
Vimu7g04211 145 Pfam JmjC domain, hydroxylase 24 57 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04211 Vimu-Chr7 40757913 40760003 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu7g04211 JmjC 1.7e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04211 K15601 - gmx:100780803 141.739