Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04198 ATGGACAATAGTATTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGTACCGATCTTGCAATTCGCGATGCCATTAAAGGACGTGCCAGTGACCCTTACGTCGTCGTCAGCATGGGCGATCAGAAGCTGAAGACTTCCGTTAAAAAAAACAACTGCAATCCTGAGTGGAATGAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCGATACGTTTGTCAGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGACATAGACTTAATACCATATGTTGAGTGTGTGCGAATGGGATGGACTAACCTTCGAAATGGTACTGTAGTGAGGATCGTTCAACCAGATGAAACTAATTGCCTTGCAAAAGATAGCAACTGCATTTGGCAAAATGAAAACATCATCACTCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAAATTGTTGTGGAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTCGATCTTTAA 528 0.4091 MDNSILGLLKLRIKRGTDLAIRDAIKGRASDPYVVVSMGDQKLKTSVKKNNCNPEWNEERTLSIKDVTTPIRLSVYDKDTFSGDDKMGDADIDLIPYVECVRMGWTNLRNGTVVRIVQPDETNCLAKDSNCIWQNENIITQEMVLKLRNVESGEIVVEIEWVDVIGCKGLSHLDL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04198 175 Pfam C2 domain 8 94 IPR000008 -
Vimu7g04198 175 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vimu7g04198 175 SMART C2_3c 8 106 IPR000008 -
Vimu7g04198 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 161 IPR035892 -
Vimu7g04198 175 Gene3D C2 domain 5 168 IPR035892 -
Vimu7g04198 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 167 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04198 Vimu-Chr7 40653135 40661215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04198 42 172 C2H2 Transcription Factor Family AT1G70790 55.639 2.16e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04198 - - gmx:100784381 270.396