Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04177 ATGGCTTCCAAGCCCCGAACAGTTGAAGAGATCTTCAAGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCGCGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCAGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAACGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGACAATGGATAGCGGAAGCAAATCTGATGGAGCCATGATGAAAGGTGAGCCTATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACACTGGAGATGAACTTTGGATCGGTTGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCGCTATAAATGTCCAGCATGCAGCTTGAGGAGGAGCAGGTCAAAGACTGAAGACAATGAAATGGGAATAAGTGACTCAGATGAACCTTGTTTCATGGCTGACAAGATCACAAGATAG 723 0.4675 MASKPRTVEEIFKDFRARRNAIIRALTRDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLTMDSGSKSDGAMMKGEPIKIFCGSCGGKYTGDELWIGCDICEWWYHGRCVMINPAKADTLKRYKCPACSLRRSRSKTEDNEMGISDSDEPCFMADKITR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04177 240 FunFam PHD finger alfin-like protein 156 211 - -
Vimu7g04177 240 ProSitePatterns Zinc finger PHD-type signature. 163 209 IPR019786 -
Vimu7g04177 240 CDD PHD_AL_plant 162 212 IPR044104 -
Vimu7g04177 240 ProSiteProfiles Zinc finger PHD-type profile. 160 212 IPR019787 -
Vimu7g04177 240 PANTHER CPG BINDING PROTEIN 4 215 IPR045104 GO:0006355|GO:0042393
Vimu7g04177 240 SMART PHD_3 162 210 IPR001965 -
Vimu7g04177 240 Pfam PHD-finger 162 210 IPR019787 -
Vimu7g04177 240 SUPERFAMILY FYVE/PHD zinc finger 161 215 IPR011011 -
Vimu7g04177 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 210 IPR013083 -
Vimu7g04177 240 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04177 Vimu-Chr7 40419410 40423051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04177 2 216 Alfin-like Transcription Factor Family AT5G05610 61.181 8.17e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu7g04177 Alfin 5.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04177 K26274 - vra:106776977 494.197