Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04176 ATGTTTTTGGCTCCATTAAAGCTATTCATGTCAGATCTTTTCACCCTCTCTTATCATCACAATATGTTCTTTTGTTCCAATTTTCCTGAATATCCATTACTGCAGGCACCACTATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCTTTATCCACCAAATCACCATCAACACCAGCTCATGAAGTTCCAACCTTCTGCTGATGAAAACAACAATGGATCAATGGTGGATTACATGCCTCAAACACCACCACCACCACCACCCCCACATGGTTTTTACGCTGGTTCTAGCACTGCCACAATATCCTATGATAAATTGAGTTTTGCAGACGTCATGCAGTTTGCGGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCAGTGTTAAACGACAAGATGGAGGAAGAGCAGACTCTGATGGTGAATGAGGACCCCGATGGTGAAGCAGAAAATCACGATGAGAGGTTCAACATGGTGGATGTGGAGGAGAAGTCAAGGGTTGGTGAAGAGGGAATGATGATTAGAGAAGATGAAGAGACTCGGCTTTCTGATGACAACAATTCCGTGCAGATTCGGTTTCTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAGGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTCATGCCTGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGGTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGAACCCTCCATTGCACAACAACAACCTCCTTTCTTTCCACCTTTGGCAATTCCGAACGAGCAGATGAAGCTGGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCATGTTTGGCTGATGTTGAAGTCAAGCTTCTAGGATTTGATGCCATGATCAAAATCTTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTCGAAGATCTGCAACTAATAATCCTTCATACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTGCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1359 0.4378 MFLAPLKLFMSDLFTLSYHHNMFFCSNFPEYPLLQAPLSMPPSFNTLDYSLDHHLYPPNHHQHQLMKFQPSADENNNGSMVDYMPQTPPPPPPPHGFYAGSSTATISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEQTLMVNEDPDGEAENHDERFNMVDVEEKSRVGEEGMMIREDEETRLSDDNNSVQIRFLGQEETQKNAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEAQARQVGEPSIAQQQPPFFPPLAIPNEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04176 452 PANTHER TRANSCRIPTION FACTOR FAMA 158 443 IPR044283 GO:0003700|GO:0010052
Vimu7g04176 452 FunFam Basic helix-loop-helix transcription factor 238 313 - -
Vimu7g04176 452 Gene3D - 238 312 IPR036638 GO:0046983
Vimu7g04176 452 SMART finulus 253 304 IPR011598 GO:0046983
Vimu7g04176 452 MobiDBLite consensus disorder prediction 225 249 - -
Vimu7g04176 452 Pfam Helix-loop-helix DNA-binding domain 248 299 IPR011598 GO:0046983
Vimu7g04176 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 313 IPR036638 GO:0046983
Vimu7g04176 452 MobiDBLite consensus disorder prediction 217 249 - -
Vimu7g04176 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 298 IPR011598 GO:0046983
Vimu7g04176 452 CDD bHLH_AtFAMA_like 250 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04176 Vimu-Chr7 40411138 40412922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04176 71 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.097 7.08e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g04176 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04176 K26213 - gmx:100813515 657.907