Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04173 ATGAGCCCTCTAATCAGACTAGCCTTAGCAATCAACTTCATTTCTAGTTCCCATTCTTTCATAATGCTCACGAACCTCTTACTTCTTCCTCACACCCTTCTCAAATGGACATTACATTCTATTTTCTTCCACTTCTACCATCCCTTGTCGTGCACCCTCTTCAGAGATAACTCCATCACGTGCCGTCACGTATCGAGGGAGGAGGAAGATTGCGCCGTGTGTCTCTGCAAAATGGGAGAAAGAGAAGAAGAAGATATTGTAACTCTGCGGTGCGAGCATGCCTTTCACAGAGGCTGCTTCTACACATGGGTTGCTTTCAACACTAACACTACTACCACTTGCCCTCTTTGCAGAGATTCAGTGGTTACCACCACGCATTAA 381 0.4567 MSPLIRLALAINFISSSHSFIMLTNLLLLPHTLLKWTLHSIFFHFYHPLSCTLFRDNSITCRHVSREEEDCAVCLCKMGEREEEDIVTLRCEHAFHRGCFYTWVAFNTNTTTTCPLCRDSVVTTTH 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04173 126 SUPERFAMILY RING/U-box 63 123 - -
Vimu7g04173 126 ProSiteProfiles Zinc finger RING-type profile. 71 118 IPR001841 -
Vimu7g04173 126 PANTHER RING ZINC FINGER PROTEIN-RELATED 64 122 - -
Vimu7g04173 126 Pfam Ring finger domain 70 118 IPR001841 -
Vimu7g04173 126 SMART ring_2 71 117 IPR001841 -
Vimu7g04173 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 124 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04173 52 123 C3H Transcription Factor Family AT1G15100 38.356 1.37e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04173 - K16282 sind:105162218 63.5438