Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04160 ATGTTAATGCTTGCTACAAACAACTTCAGCAGCAAGAACATGATTGGCAAAGGTGGTTTTGGACATGTCTACAAAGGGTATCTTCAGGATGGTACAGTTATAGCAGTAAAAAGGCTCAAAGATGGTAATGCTATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGGCTATATGGATTCTGCATGACAACTACAGAGAGGCTCTTGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAACAACTATGATAGGATTGAGCTTGATGAAATTGTGCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCACAGACCCAAGATGTCTGAGGTGGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCCTCGCAGAGAGCAGAATCCACAAGAAGCAGAGGAAATGAACTCTCTTCTTCAGAGCGCTACTCTGATCTCACTGATGATTCTTCATTACTTGCACAAGCAATGGAACTTTCTGGGCCAAGATGA 564 0.4291 MLMLATNNFSSKNMIGKGGFGHVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04160 187 FunFam Somatic embryogenesis receptor kinase 1 1 85 - -
Vimu7g04160 187 MobiDBLite consensus disorder prediction 144 187 - -
Vimu7g04160 187 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 94 147 - -
Vimu7g04160 187 ProSiteProfiles Protein kinase domain profile. 9 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04160 187 MobiDBLite consensus disorder prediction 154 178 - -
Vimu7g04160 187 SUPERFAMILY Protein kinase-like (PK-like) 2 84 IPR011009 -
Vimu7g04160 187 Pfam Protein kinase domain 10 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04160 187 SMART tyrkin_6 9 136 IPR020635 GO:0004713|GO:0006468
Vimu7g04160 187 ProSitePatterns Protein kinases ATP-binding region signature. 15 37 IPR017441 GO:0005524
Vimu7g04160 187 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04160 Vimu-Chr7 40221890 40226205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04160 2 82 Receptor kinase-like Gene Family AT5G16000 81.481 3.25e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu7g04160 Pkinase 6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04160 - - gmx:100804283 202.601