Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04155 ATGGTTGCCGTCGTTTGTGTTGTTGCTGAACTCACTGTAACTGCTCGTTCAGGGAGGAGGCTCGGTGAGTCCTCTGATAATCACCAGGGTGTACATTGGATCAATTTTTATGTGCATTCTCTTATGGGTATTATTGTTTTTGTACCAAAGCTTGGGAATTTTCTTTTTGATTTTGGATCCAAAGTGCTTTCAAGAACTGAGTTTTTGAAGGCCCTTTTTTGGTTTTGCTATGTTTCCAAACAGCTTCTGTTGGTTTCTGTTCCCTGTTGGGTGCAAGATTACATGTCCACGGATAAAATGATAGTAAGAGTGCCAAGGCTTCTTTCTGGATTTATAGAAACTGGGAATTGTTCAATGGGAAAAGAGATTTCCGATTCTGATTCCCATCACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTGTGATCGCCATGAAATTGCTCCAATCCAAGACCAACTATCCTTTGAGAAGGGTTTTTTCATTGTAATTCGTGCATGCCAATTGTTAGCACAAAAGAATGATGGAATAGTATTGGTAGGGGTGGCAGGTCCTTCCGGAGCAGGCAAGACTGTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCTGTCATTTCAATGGATAATTACAATGATTCCAGTCGAATTGTTGACGGCAACTTTGATGATCCACGCTTAACAGACTACGACACGTTACTTCAGAATTTACATGATTTAAAGGAAGGAAAGCCTGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGAACAGGATACAGGACAGTAGAAGCTCCAACTTCTCATATCGTGTTTATAGAGGGCATCTATGCCTTGAGTGAAAAGTTACGACCTCTACTGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTCATACGTGATATTCAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTGTATCCCATGTACAAGGCCTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCAACTTACATATTAAAGTCAGCAAAGAATCTAGCAGTGGATCAAATTAAAGCTGTTCTCTCTGAGGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTCCTACCACCTGGTGAAGATCCAGAAACTTGCCAATCATATTTGCGCATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACTGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTTAGTGTGCGCCTTCTCGGTGGACTAATGGCCTTGGGGTACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTTTTCTCTGATGATAGGGTTTGTGTGAAACTGGATTGGCTTGAGCAACTCAATAGACATTATGTTCAGGTACAAGGAAGAGATCGCTTGGTTTTACAATACATAGGACAGCAGCTAGGTCTAGATGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGGACGAGGTTATGGCCCTACCAGAGGATTTGAAGACAAAACTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACCAATCAAAGAGACAAAAACCTTGCCAAGGTTACTGGATATGATTCCAACAATAGAAGGTTTGGTGAAAGAAATTCAGAGTCCAGCACAATGTCAGTGAATCAGGGAGCAATCAATCAACTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAATTAAACACCAAGAGAAATTCTCCAAGCCAACAGAATATGTCACTTCAAACTGAGACATGCAATGGATCAGCTCCCACCTCATACTTCATCACTAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGGCAAATTCCTCTTCATCATCACAGTTAAATAAGGATTCTCCTTTAATGGAAGAGATATCAAGCATTGCACGCAGTCAGCGTCAGATCATGCATCAATTGGACAATCTCAATAATCTTCTGAGGGGTAGCTCAGGGGAGAAGTCTCACCAAACAAGAACTAACCGGAGAAGCATAGATACGACAGCAGATTCCATGGGAACCTCTGTTATGGCAGTGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTGTTGAACCGTAATTGA 2346 0.4092 MVAVVCVVAELTVTARSGRRLGESSDNHQGVHWINFYVHSLMGIIVFVPKLGNFLFDFGSKVLSRTEFLKALFWFCYVSKQLLLVSVPCWVQDYMSTDKMIVRVPRLLSGFIETGNCSMGKEISDSDSHHKRLGLLKDQVHLVKRKDCDRHEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIVLVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPVQVPIYDFKSSSRTGYRTVEAPTSHIVFIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSAKNLAVDQIKAVLSEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLQYIGQQLGLDGSYIPRTYIEQIQIEKLVDEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYDSNNRRFGERNSESSTMSVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLNTKRNSPSQQNMSLQTETCNGSAPTSYFITSLGNGSLTGSKMANSSSSSQLNKDSPLMEEISSIARSQRQIMHQLDNLNNLLRGSSGEKSHQTRTNRRSIDTTADSMGTSVMAVVAVGCLGIFLMKGLLNRN 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04155 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 354 IPR027417 -
Vimu7g04155 781 SUPERFAMILY CYTH-like phosphatases 385 525 IPR033469 -
Vimu7g04155 781 PANTHER URIDINE KINASE 136 541 - -
Vimu7g04155 781 CDD UMPK_like 185 357 - -
Vimu7g04155 781 MobiDBLite consensus disorder prediction 649 669 - -
Vimu7g04155 781 Gene3D - 184 383 IPR027417 -
Vimu7g04155 781 PRINTS Uridine kinase signature 250 265 - -
Vimu7g04155 781 PRINTS Uridine kinase signature 306 316 - -
Vimu7g04155 781 PRINTS Uridine kinase signature 342 355 - -
Vimu7g04155 781 PRINTS Uridine kinase signature 183 200 - -
Vimu7g04155 781 Coils Coil 621 655 - -
Vimu7g04155 781 MobiDBLite consensus disorder prediction 731 750 - -
Vimu7g04155 781 MobiDBLite consensus disorder prediction 647 669 - -
Vimu7g04155 781 Pfam CYTH domain 371 522 IPR023577 -
Vimu7g04155 781 ProSiteProfiles CYTH domain profile. 366 528 IPR023577 -
Vimu7g04155 781 Pfam Phosphoribulokinase / Uridine kinase family 186 354 IPR006083 GO:0005524|GO:0016301
Vimu7g04155 781 MobiDBLite consensus disorder prediction 597 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04155 Vimu-Chr7 40172526 40189388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04155 185 354 PRT Gene Family AT5G40870 28.177 7.06e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04155 K00876 - gmx:100797542 1186.4