Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04106 ATGCTCAGCTCGAGGCAATCCTTGTACATCTCTTCCTCTTCTCCTTCTTCTTCCTTTTCTTCTTCTTCATTGTTTTGTATCATTCTCCTCCAACTTACTTTTCTCTATGGCATTGCCTTCTCTGCAAATCACGAAGCCTCAACTCTCTTCTCTTGGCTCCATGCTTCTGCATCACCACCTCCTCCTTCTTTCTCCAACTGGAACATTCTTCATTCCAATCCATGCAACTGGACATTCATAACATGCTCCTCACTAGGCTTTGTCACTGAAATCAACATACAATCCATCCCTATAGAGCTTCCTATACCTTCCAACCTCTCTTCATTTCACTCTCTTCAAAAGCTTGTCTTATCTGATTCCAATCTAACTGGAACCATCCCTTCAGACATTGGTGATTGCTCTTCCCTCACTGTCATTGACCTCAGCTCCAACAATCTTGTTGGTTCAATTCCTGCAAGCATTGGAAAGCTCCAGAAACTTCAGAATTTGTCTTTGAACTCTAACCAGCTTACTGGAAGGATCCCTGTGGAGTTAAGCAACTGCATTGTTTTAAAAAATCTACTCCTTTTTGACAATCAGATAAGTGGGACTATCCCACCTGAGCTGGGGAAGTTGTCACAACTTGAGTCCCTAAGAGCAGGAGGGAACAAAGACATAGTTGGGAAGATTCCTGAAGAGTTAGGAGAATGCAGCAATTTGACAGTTTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAAGCTCACAAAGCTTCAGACTTTGTCCATCTATACCACCATGCTGTCCGGTGAAATTCCACCGGAGTTAGGTAACTGTTCTGAGCTTGTTAATGTGTTCTTGTATGAAAATAGCTTATCAGGATCTATTCCATCTGAGCTTGGCAAGCTCAAGAAGCTGGAACAGTTGTTTTTCTGGCAGAATGGTCTTTTGGGGGCTATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAATTTGATTTCTCCTTAAATTCTCTATCTGGGACCATACCTGTATCTTTGGGGGGTCTCTTGAATCTAGAGGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATACCTTCCAGTCTTTCAAATGCTAAAAATCTTCAACAGTTGCAAGTTGACACAAACCAGCTCTCAGGCTTAATTCCTCCAGAGCTTGGTCAGCTGTCAAACCTCATGGTTTTCTTAGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCACTTTGGGGAACTGTAGTAATCTTCAAGCACTGGACTTGTCACGCAATGCACTCACTGGTAGTATTCCCGTTGGCCTATTCCAGCTTCAAAACCTCACAAAACTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCCCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGCAACCTGAAGAGCTTGAACTTTTTAGATCTCTCTGGGAACCGCCTCTCCGGTCCAGTGCCTGATGAGATTGGAAGCTGCTCTGAACTGCAAATGATAGACTTAAGCAGCAACAACTTAGAAGGTCCTCTGCCTAATTATTTATCTTCACTATCAGCAGTTCAGGTTTTGGATGCATCTTCCAACAGGTTTTCAGGTCCTTTACCAGTAAGTTTGGGCCGTCTTGTTTCTCTGAGTAAACTAATCCTAAGCAATAACTTGTTTTCTGGACCTATTCCTGCATCATTGAGCCTATGTTCAAATCTCCAGCTGCTTGATCTTAGCAGCAACAACCTCAGTGGAAACATACCAGCTGAGCTTGGCCGGATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCCGTGGAATAATCCCAGCTCAGATATCTTATCTTAACAAGCTTTCCATATTGGACCTCTCACACAACCAGTTGGAAGGAGATTTGAAACCTCTTGCTGAGTTAGACAACCTTGTCTCACTCAATGTTTCTTATAACAAATTTTCTGGCTGTCTTCCAGATAACAAGCTTTTCAGGCAGTTGACATCAAAAGACTTCACTGAAAATCAAGGGCTGGCATGCTTTGTGAAGGATTCCAGCAAGACTGATATGTCACTGAACGGAAATGAAGTAAGGAAATCGCAAAGGCTTAAGCTAGCCATTGGATTGCTGATAGCCTTGACAGTGATAATGATCGTTATGGGGATAACTGCTGTCATCAAAGCAAGGAGAGTTATTAGAGATGATGATTCAGAACTGGGTGATTCATGGCCATGGCAGTTCATACCATTTCAGAAGCTAAACTTTTCAGTGGAACAAATACTGAGATGCTTAGTTGATAGAAATATTATTGGAAAGGGATGTTCTGGTGTTGTATATAGAGCTGAAATGGACAATGGTGAAGTGATTGCTGTGAAGAAATTGTGGCCAACAACTATTGACGCAGAAGAAGCATTTAAGGAAGAAAAAAGTGGAGTTCGTGATTCATTCTCAGCTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGCTGGAACAGACAAACAAGATTGCTTATTTTCGATTACATGCCGAATGGAAGTTTGAGTAGTCTACTTCATGAGAGGAGTGGAAATTCTCTGGAATGGGACCTTAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGGCTTGCATATCTACATCATGACTGTGTCCCTCCTATAGTCCACAGAGATATTAAAGCCAATAATATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTACGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGATGTTTACAGCTATGGAGTAGTTTTGTTAGAAGTGTTGACGGGTAAGCAACCAATCGATCCAACCATACCAGATGGTGTACATGTTGTTGATTGGGTGAGACAGAAAAAGGGTCTTGAAGTGCTTGATCCAAGCTTACTCTCTAGACCAGAATCAGAGATAGAGGAAATGATGCAGGCATTGGGAATAGCATTATTGTGTGTGAACTCATCTCCTGATGAAAGGCCAACAATGAGAGATATCGCGGCTATGCTGAAGGAGATAAAGCATGAAAGGGAGGAGTATGCAAAATTTGATGTGCTTCTAAAAGGGTCTCCTGCAAATGGTGCATCTGGGAATAAGAACTCTGGTGGAGTTCTGCCAACAGCTTCTTCATCAGTACCAATCATGCAAACTTTGAAAACAAAAAGCAATAACTCAAGCTTCTCTGTGTCTTCTCTGCTGCATTCATCTTCAAGTGTTAAGATGGGTTCCAAATGA 3414 0.4212 MLSSRQSLYISSSSPSSSFSSSSLFCIILLQLTFLYGIAFSANHEASTLFSWLHASASPPPPSFSNWNILHSNPCNWTFITCSSLGFVTEINIQSIPIELPIPSNLSSFHSLQKLVLSDSNLTGTIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLQKLQNLSLNSNQLTGRIPVELSNCIVLKNLLLFDNQISGTIPPELGKLSQLESLRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGKLTKLQTLSIYTTMLSGEIPPELGNCSELVNVFLYENSLSGSIPSELGKLKKLEQLFFWQNGLLGAIPEEIGNCTSLRKFDFSLNSLSGTIPVSLGGLLNLEEFMISDNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGQLSNLMVFLAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPVGLFQLQNLTKLLLISNDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNRLSGPVPDEIGSCSELQMIDLSSNNLEGPLPNYLSSLSAVQVLDASSNRFSGPLPVSLGRLVSLSKLILSNNLFSGPIPASLSLCSNLQLLDLSSNNLSGNIPAELGRIETLEIALNLSCNSLRGIIPAQISYLNKLSILDLSHNQLEGDLKPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLTSKDFTENQGLACFVKDSSKTDMSLNGNEVRKSQRLKLAIGLLIALTVIMIVMGITAVIKARRVIRDDDSELGDSWPWQFIPFQKLNFSVEQILRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTIDAEEAFKEEKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRQTRLLIFDYMPNGSLSSLLHERSGNSLEWDLRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGVHVVDWVRQKKGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANGASGNKNSGGVLPTASSSVPIMQTLKTKSNNSSFSVSSLLHSSSSVKMGSK 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 245 341 IPR032675 -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 342 439 IPR032675 -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 536 619 IPR032675 -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 156 244 IPR032675 -
Vimu7g04106 1137 SUPERFAMILY RNI-like 114 507 - -
Vimu7g04106 1137 SMART serkin_6 785 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04106 1137 Gene3D Transferase(Phosphotransferase) domain 1 872 1081 - -
Vimu7g04106 1137 SUPERFAMILY Protein kinase-like (PK-like) 763 1064 IPR011009 -
Vimu7g04106 1137 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 500 1064 - -
Vimu7g04106 1137 FunFam LRR receptor-like serine/threonine-protein kinase 540 615 - -
Vimu7g04106 1137 Pfam Leucine rich repeat N-terminal domain 42 83 IPR013210 -
Vimu7g04106 1137 ProSiteProfiles Leucine-rich repeat profile. 641 663 IPR001611 GO:0005515
Vimu7g04106 1137 Pfam Protein tyrosine and serine/threonine kinase 789 1062 IPR001245 GO:0004672|GO:0006468
Vimu7g04106 1137 MobiDBLite consensus disorder prediction 1108 1137 - -
Vimu7g04106 1137 PRINTS Leucine-rich repeat signature 639 652 - -
Vimu7g04106 1137 PRINTS Leucine-rich repeat signature 425 438 - -
Vimu7g04106 1137 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 441 535 - -
Vimu7g04106 1137 SMART LRR_typ_2 422 446 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 302 326 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 639 663 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 494 518 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 109 133 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 350 374 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 157 181 IPR003591 -
Vimu7g04106 1137 SMART LRR_typ_2 566 590 IPR003591 -
Vimu7g04106 1137 SUPERFAMILY RNI-like 367 681 - -
Vimu7g04106 1137 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Vimu7g04106 1137 Gene3D Phosphorylase Kinase; domain 1 771 871 - -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 620 699 IPR032675 -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 440 535 IPR032675 -
Vimu7g04106 1137 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 872 1081 - -
Vimu7g04106 1137 Gene3D Ribonuclease Inhibitor 43 155 IPR032675 -
Vimu7g04106 1137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Vimu7g04106 1137 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 217 440 - -
Vimu7g04106 1137 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vimu7g04106 1137 Pfam Leucine rich repeat 621 675 IPR001611 GO:0005515
Vimu7g04106 1137 FunFam Putative LRR receptor-like serine/threonine-protein kinase 620 705 - -
Vimu7g04106 1137 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 768 871 - -
Vimu7g04106 1137 FunFam Nuclear pore complex protein NUP107 42 199 - -
Vimu7g04106 1137 ProSiteProfiles Protein kinase domain profile. 785 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04106 Vimu-Chr7 39530260 39533887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04106 40 1082 Receptor kinase-like Gene Family AT5G56040 49.149 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu7g04106 PK_Tyr_Ser-Thr 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04106 - - gmx:100818541 1930.22