Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04105 ATGACCTTCTTAGAAGAGGCTGGAAAAATGAAAGGGGTGGATCTATATTTTTATATTTCACTGATGCCTTCTAACGCCATCGTCCAATACAGCTCTTCTTCATCTCATGCAATTAACACATACGACGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTTACTGGTTTTCTCTTTCAAGCTCTCCGTACAAAAGGCATTCATGCCTTCAAAGATGATCAACATCTCAATAAAGGTCAATCCATTGCACCCGAGCTCCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTATTGTCTTCTCAAACAACTATGCTTCCTCCATTTGGTGCTTGCGTGAACTCGCAGAGATCCTTAACTGCGTTCAAACTTCGCCAAGACCTGTTATACCTATATTTTATGATGTTGATCCTTCGGTGGTTCGCAAACAGAGTGGATGTTATGAAAAAGCATTTGCAGAACACGAAAACAGATTCAGAGAAAATAAAGCCAAGATGGAGGAAGCTAAGAGATGGAGAAAAGCTCTCACAGAAGTGGCCAATCTCTCTGGTTGGGATATCCAAAATAAGCCACAATATGCGCAGATAGAAGAAATTGTTCAAAACATAACAAATATTTTGGGTCCCAAAATTTCTAGTCTTCCAAAGGATGAACTAGTTGGAATAGAGTATCGGGTTCAAGAATTAAAAGATCTTCTGTGTTATGGATCACTTAATGATGTTCGAGTAGTTGGAGTTAGTGGGATGGGTGGCATAGGAAAGACAAGTGGAGGGAGCAAAATCATCATAATTTCTAGAGATGAACATATATTAAGAATGCATGGAGTGGACGATGTTTATCAAGTCCAGCCGTTGAGTTGGGAAAATGCTGCCCAACTATTCTGTAGAAATGCTTTCAAAGTTAATTATATTTTGAGCGATTACGAAAAGTTGACACGTGATGTACTATCACATGCTCAAGGACATCCTTTGGCAATTGAAGTAATTGGTTCATCTTTGTTTGGCCGAAGTGTATCTCAATGGAAAAGTGCATTGACTAGGCTAAAAGAAAATAAAAATAAAAGTGTTATGGATGTTTTACGTATAAGCTTTGATGAGCTGGACGAAGGAGACAAAGAAACATTTTTGGATATTGCTTGCTTCTACAATGGATATGAAGAAGTATACGTGAAGGAAATTCTAAGTTTCCGAGGATTTCATCCTGAATTTGGCATGCAAGTTCTTATTGATAAATCACTCATAACCAATAACTATGGAAGGATATATATGGATAGCTTGCTAATGGATTTGGGAAGGAGTATTGTTCGAGAAAAATCACCTAAGGAGCCCAGGAAGTGGAGCAGGTTGTGGGACTACCAAGATTTCCACAATGAAATTGACAATCTTGAAGCCATAGTTGTAAAAAATGAAGAATGGATGTTTGGTAGAACAACAATGAGGGCAGATGGTCTGTCGAACATTAGACAGCTTAAGTTGCTTAAACTTAACGTGAACTTTTCAGGAAGTCTCAGTCATCTTTCGAATGAACTAGGATATCTTACTTGGAACAAATATCCTTTTAAATGGTTGCCTCCAAGTTTTCGGCCGGACAAACTAGTTGAGTTAAAACTGAGATGGAGCAGTATTCAATGA 1635 0.3865 MTFLEEAGKMKGVDLYFYISLMPSNAIVQYSSSSSHAINTYDVFVSFRGEDTRNNFTGFLFQALRTKGIHAFKDDQHLNKGQSIAPELLQAIQASRLFIIVFSNNYASSIWCLRELAEILNCVQTSPRPVIPIFYDVDPSVVRKQSGCYEKAFAEHENRFRENKAKMEEAKRWRKALTEVANLSGWDIQNKPQYAQIEEIVQNITNILGPKISSLPKDELVGIEYRVQELKDLLCYGSLNDVRVVGVSGMGGIGKTSGGSKIIIISRDEHILRMHGVDDVYQVQPLSWENAAQLFCRNAFKVNYILSDYEKLTRDVLSHAQGHPLAIEVIGSSLFGRSVSQWKSALTRLKENKNKSVMDVLRISFDELDEGDKETFLDIACFYNGYEEVYVKEILSFRGFHPEFGMQVLIDKSLITNNYGRIYMDSLLMDLGRSIVREKSPKEPRKWSRLWDYQDFHNEIDNLEAIVVKNEEWMFGRTTMRADGLSNIRQLKLLKLNVNFSGSLSHLSNELGYLTWNKYPFKWLPPSFRPDKLVELKLRWSSIQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04105 544 SMART till_3 40 183 IPR000157 GO:0007165
Vimu7g04105 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 256 IPR027417 -
Vimu7g04105 544 Gene3D - 286 369 IPR042197 -
Vimu7g04105 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 379 IPR027417 -
Vimu7g04105 544 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 259 544 IPR044974 GO:0006952
Vimu7g04105 544 Pfam TIR domain 41 222 IPR000157 GO:0007165
Vimu7g04105 544 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 186 IPR035897 -
Vimu7g04105 544 Pfam NB-ARC domain 259 363 IPR002182 GO:0043531
Vimu7g04105 544 Gene3D - 38 211 IPR035897 -
Vimu7g04105 544 ProSiteProfiles TIR domain profile. 39 208 IPR000157 GO:0007165
Vimu7g04105 544 Gene3D - 212 258 IPR027417 -
Vimu7g04105 544 SUPERFAMILY "Winged helix" DNA-binding domain 356 458 IPR036390 -
Vimu7g04105 544 FunFam Disease resistance protein (TIR-NBS-LRR class) 37 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04105 Vimu-Chr7 39522344 39525087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04105 239 544 WRKY Transcription Factor Family AT5G45050 31.751 1.01e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04105 - - pvu:PHAVU_010G054500g 438.343