Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04101 ATGAACCACGAAGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCTTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCATACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCTGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAAGTAAAGTTAATCAACTTCTTGTTCGTGGGTTGAGGGAGCTTGTTGCCTTCTTTGCATTTTCTATCACTCCGATCTTCGAGGCATCTTGTCGTGGTTTTTGTTGCACCGGTCATGGAGAGGCATTGTCGTGA 633 0.4803 MNHEDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNQLLVRGLRELVAFFAFSITPIFEASCRGFCCTGHGEALS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04101 210 CDD HMG-box_SF 117 153 - -
Vimu7g04101 210 Gene3D High mobility group box domain 92 160 IPR036910 -
Vimu7g04101 210 PANTHER PROTEIN YABBY 6-RELATED 14 165 IPR006780 GO:0007275
Vimu7g04101 210 MobiDBLite consensus disorder prediction 83 103 - -
Vimu7g04101 210 MobiDBLite consensus disorder prediction 83 112 - -
Vimu7g04101 210 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Vimu7g04101 210 FunFam Protein CRABS CLAW 89 160 - -
Vimu7g04101 210 SUPERFAMILY HMG-box 100 154 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04101 Vimu-Chr7 39403518 39409217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04101 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 64.535 2.42e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu7g04101 YABBY 3.5e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04101 K25796 - gmx:100819079 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04101 7 39403518 39409217 Vimu7g04101 7 39403518 39409217 ECH