Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04098 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCGTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGTTTCCCTGACTTGTTGCAGAAGTCTTCTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGATCTAGATAGTAATTCTAATAGAAGAGGGAATTCCTCTACACAAGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCGAAGACTCATGATTCTTCACTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTACAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCCATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCCGAGTTCGACGATGGCAAGCGTAGTTGCCGCAGGCGCCTAGCTGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCAATCATATCAAGGTACCAAGTATCTAGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCATGGAAAACATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCGGTTCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCGAACCATTTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACCGCCTCTAAGGATGTTATCAAGAATCAAACCGCACCATTCTCTAATGCAGTTCATGATCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACCTGTTCGACATCAAACACCGTCTTTCCTCGGAACATGGACCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTTATGAGATCATTGATGGGTAG 1458 0.4239 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSSHGSQPLETSSYDLDSNSNRRGNSSTQVIALDSTMGEEESDSKHLSSLVEAKTHDSSLIDLKLGRLADCKGTSSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQNIFQSGILFHGKHAQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGSRILHGIHIQDRDDLVSEPFLRITSSADKYAANESFPCNTASKDVIKNQTAPFSNAVHDLQDHHGDDICQPSDLFDIKHRLSSEHGPTVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTYEIIDG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04098 485 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Vimu7g04098 485 MobiDBLite consensus disorder prediction 70 94 - -
Vimu7g04098 485 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Vimu7g04098 485 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
Vimu7g04098 485 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 359 IPR044817 GO:0003677
Vimu7g04098 485 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Vimu7g04098 485 Pfam SBP domain 179 252 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04098 Vimu-Chr7 39365963 39370389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04098 1 345 SBP-box Gene Family AT1G69170 38.108 3.08e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu7g04098 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04098 - - vum:124825483 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04098 7 39365963 39370389 Vimu7g04098 7 39365963 39370389 ECH