Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04093 ATGGGTAGGGGAAAGGTCGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTAACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGGCTGTTTTCTTTTCTGGGGGTCTTGATTTTCCCTCCCTGCTTTCATCCACTGCTTAAAGTTCACATCTTGCTGCTGATTAACTTGTCTGGCTTTATCAAGGATGTGTTGTTTGTTTATGGTTTTGTCTCTTCAAATTTGTTTTCATCTTCCTTACAATTTTCCTCTCCTTTTTCTTTACAGTCTCAGATTCATGATTTTTGCATGGCCAAGACACTGGAACGGTATCACAGATGCAGCTATGGAGCCTTGGAATTACACCACCAACCTGAAATAGAGACACAGAGACGCTACCAAGAGTACCTGAAGCTAAAATCCAAAGTGGAGGCACTACAGCAAACACAAAGAAACCTTCTTGGTGAAGAATTGGAGCATTTAGATGTTAAGGAGCTTGAACAGCTTGAACGTCAGCTCGACTCTTCCCTCAAACAGATAAGGTCTAACAAGACACAGCAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTGCTGGAAACTAACAATATCCTGAGGAACAAGTTGGAGGAAATCAATGTAGCCCTTCAACCAACATGGGAAGCTAGGGAGCAAACTGCACCCTACGATGGCCACCCTCACCCATCAGAGGGATACTATGACACAGCACATTGCAACAGTACATTGAGAATCGGCTATGATTCTTCAGGGTTAAATGAAGCTGGAGGCGCTGCAGGAACCTCAGCCCAAAATGCTAGTGAGTTCATGCATGGATGGATGAACTGA 936 0.4444 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPRLFSFLGVLIFPPCFHPLLKVHILLLINLSGFIKDVLFVYGFVSSNLFSSSLQFSSPFSLQSQIHDFCMAKTLERYHRCSYGALELHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEINVALQPTWEAREQTAPYDGHPHPSEGYYDTAHCNSTLRIGYDSSGLNEAGGAAGTSAQNASEFMHGWMN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04093 311 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 ProSiteProfiles K-box domain profile. 155 245 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g04093 311 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Vimu7g04093 311 Pfam K-box region 154 239 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g04093 311 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Vimu7g04093 311 Coils Coil 189 212 - -
Vimu7g04093 311 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Vimu7g04093 311 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 227 - -
Vimu7g04093 311 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g04093 311 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04093 Vimu-Chr7 39228209 39241881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04093 1 67 MADS-box Gene Family AT5G15800 88.060 5.91e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu7g04093 K-box 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04093 K09264 - gmx:100811049 350.903