Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04092 ATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAGAGGTATGCCTATGCAGAGAGGCAGCTAGTGGCAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACTACAGGCACTATATGGGAGAAGATTTGGCTTCGATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTAGATACTTCTCTCAAAAACATCCGCAATAGGAGGAACGATCTCATGTACGAGTCTATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGCAGAATAGCATCCTTGCAAAGAAGATCAAGGAGAAAGAGCAAGCTGTAGCACAACATGCTGTACAATGGGAACAGCCAAACTACAGGGTTGACACATCTTTCTTACCACAGCAGCAACCACTTCCAAGCTTGAACATAGGTGGCAATAATTTCAATCAAGATGCTGCACCAGAACTAGGAAGGAATGGTCTTGACCTGACCCTGGAACCACTGTATTCTTGCCACCTTGGATGCTTCTGA 729 0.4472 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLASMSLKELQSLEQQLDTSLKNIRNRRNDLMYESISELQKKEKRIQEQNSILAKKIKEKEQAVAQHAVQWEQPNYRVDTSFLPQQQPLPSLNIGGNNFNQDAAPELGRNGLDLTLEPLYSCHLGCF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04092 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 FunFam Floral homeotic protein APETALA 1 13 68 - -
Vimu7g04092 242 Coils Coil 122 145 - -
Vimu7g04092 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Vimu7g04092 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vimu7g04092 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g04092 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 Coils Coil 151 178 - -
Vimu7g04092 242 Coils Coil 95 115 - -
Vimu7g04092 242 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vimu7g04092 242 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vimu7g04092 242 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g04092 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g04092 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04092 Vimu-Chr7 39211996 39215696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04092 1 242 MADS-box Gene Family AT1G26310 62.257 2.47e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu7g04092 K-box 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04092 K09264 - gmx:100819745 448.743