Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04064 TTGGGAATTGGACAACAGGAGCTTCTTGAGTTAGGTGAATGGATTGGCAACTTAGACAAGGGTTTGTTAGAAGACATTATTGCAAGACAAATGAGGACAAAAACTTATCTATTACCTAATGACTCAGAGGGGTCAACTTTTAAGGAACGGGAATTTGATATTTGCATAATATGTCAGAATAAATATAAGAACAAAGAGAATATTGGAATTCTTCAATGCAAACATAAATACCATGCAAATTGTATAAAGAGATGGCTACATGAGAAAAATGTTTATCCCATGTGCAAGTCAAAAACATTAACTATTGTATAA 312 0.3269 MGIGQQELLELGEWIGNLDKGLLEDIIARQMRTKTYLLPNDSEGSTFKEREFDICIICQNKYKNKENIGILQCKHKYHANCIKRWLHEKNVYPMCKSKTLTIV 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04064 103 SUPERFAMILY RING/U-box 54 100 - -
Vimu7g04064 103 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Vimu7g04064 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 100 IPR013083 -
Vimu7g04064 103 Pfam Ring finger domain 54 96 IPR001841 -
Vimu7g04064 103 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 99 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04064 Vimu-Chr7 38727471 38727930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04064 6 100 C3H Transcription Factor Family AT2G15530 37.895 3.74e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04064 K19041 - var:108324602 176.792