Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04062 GGATGCGAAAAACAAATGCTTGAAAGAAGATACAAGGTGCCATTGTCTACCGGAAGTGACGATGATTGGGATCACAAAGGCAACGGTTGGAGAAGCTGTGGTGGTAAGTACTCCGAAAATTTTGATGCGAAGAGAAGACAGAATAGGAGAGGGTGGTTTGGTTTATTGTCAAATGAAGAAGGCTCACGAGACACGCATGGGCTCACCCACATCCTATCCGTCCTTCTCTCTCAGCTGCTGACTCACACATGTCCGTCGCCGGAAAAACCAGCTGCCACCTCAACGCCGCCGGCGAACGCCCTTCGCAGAATCTCACCCGACGACGTTGCCTTTCTCAATTCCCCATCTGGAACAATGAGAGCGGGGAAAGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTTGGTTCTTCCAAGAAACAAGGCACTTCCTCTGCCCCCAACACCAACAAAGATGGAAAGGCCATTGATAAGGCCAGTGCGATAAGATCGAAACATTCTGTGACCGAGCAGCGGAGAAGGAGCAAGATAAACGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAGAAGAGGGACACCGCATCATTTTTGTTAGAGGTGATCGAGTATGTTCAGTACTTGCAGGAGAAGGTACAAAAGTATGAAGGTTCATATCCAGGTTGGGGTCAAGAGCCCTCGAAGTTAATGCCATGGGTAAAATAG 717 0.484 GCEKQMLERRYKVPLSTGSDDDWDHKGNGWRSCGGKYSENFDAKRRQNRRGWFGLLSNEEGSRDTHGLTHILSVLLSQLLTHTCPSPEKPAATSTPPANALRRISPDDVAFLNSPSGTMRAGKGNQEEDEYDEEDFGSSKKQGTSSAPNTNKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWGQEPSKLMPWVK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04062 238 FunFam BHLH domain class transcription factor 160 232 - -
Vimu7g04062 238 MobiDBLite consensus disorder prediction 85 175 - -
Vimu7g04062 238 MobiDBLite consensus disorder prediction 157 175 - -
Vimu7g04062 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 233 IPR036638 GO:0046983
Vimu7g04062 238 CDD bHLH_AtBIM_like 161 236 - -
Vimu7g04062 238 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 108 236 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vimu7g04062 238 Pfam Helix-loop-helix DNA-binding domain 164 213 IPR011598 GO:0046983
Vimu7g04062 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Vimu7g04062 238 SMART finulus 168 218 IPR011598 GO:0046983
Vimu7g04062 238 Gene3D - 160 229 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04062 Vimu-Chr7 38713031 38719130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04062 119 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 78.333 1.63e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g04062 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04062 - - gmx:100816055 229.565