Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04051 ATGGGAAGATCTCCATGCTGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACACCTGAAGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACTAACTACATGAGACCTGACATTAAAAGAGGAAAATTTTCCAAAGAAGAAGAACAAACAATTCTTGATCTCCATGCCATCCTTGGAAACAATCACATACCTGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATTCTAACAGGCTTGTCTTATCTCATAGTACTGGCTAACCTGAAAGAACTTTTGGATCATCACCAATGGGAACAAAGCCTTGCAAGGCTTCAAGAAGAGGCCATCCAATTGACCAACCTCCAAAGCTTACAACAACACCTCGTGCAGCCACAATTCACTGAGGCAGATCTTAACACAGTTAGTAGTACGACAAACAGTACCTTCATGATGAACAACGACATCGTCAATGTTTCAAATGATACCAGTGTGTCATCATCTAATGCAATTGGCAGTGTCCAATTGGCTAATGATTCCACCCCTTTCTCTCACATGCCTGAATTGAAAACACCATCTTCTTGTTCTCCGTGGCTTTTCTCGTGTTCAAGCACTACCCCTTCTTCTCCTTCTACCCATGTTGTTCCACCGGCGACGTCGGAGGTTTCATTGACTAATGTGGACGACAATTGCACCATTTGGCCAGAGATCCTGCTAGAGGACCCTTTGTTCAAAATGATTTCCTAG 879 0.4289 MGRSPCCDESGLKKGPWTPEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYMRPDIKRGKFSKEEEQTILDLHAILGNNHIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDILTGLSYLIVLANLKELLDHHQWEQSLARLQEEAIQLTNLQSLQQHLVQPQFTEADLNTVSSTTNSTFMMNNDIVNVSNDTSVSSSNAIGSVQLANDSTPFSHMPELKTPSSCSPWLFSCSSTTPSSPSTHVVPPATSEVSLTNVDDNCTIWPEILLEDPLFKMIS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04051 292 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Vimu7g04051 292 Pfam Myb-like DNA-binding domain 67 106 IPR001005 -
Vimu7g04051 292 CDD SANT 16 61 IPR001005 -
Vimu7g04051 292 FunFam MYB-related transcription factor 13 66 - -
Vimu7g04051 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 225 - -
Vimu7g04051 292 Gene3D - 11 65 - -
Vimu7g04051 292 CDD SANT 69 106 IPR001005 -
Vimu7g04051 292 SUPERFAMILY Homeodomain-like 11 102 IPR009057 -
Vimu7g04051 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 110 IPR017930 -
Vimu7g04051 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu7g04051 292 Coils Coil 146 166 - -
Vimu7g04051 292 SMART sant 66 108 IPR001005 -
Vimu7g04051 292 SMART sant 13 63 IPR001005 -
Vimu7g04051 292 Gene3D - 66 111 - -
Vimu7g04051 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04051 Vimu-Chr7 38510477 38511745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04051 1 291 MYB Transcription Factor Family AT5G10280 46.221 2.59e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g04051 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04051 K09422 - gmx:100785374 400.593