Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04045 ATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAAGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCTGATGGGAGGAGCAACAACAACAACACTGCTGTGGCTGCCTCAGAAAAGAAGAACTCCAACTACTATGTTTCTTCTGCTGCAGAATCTGCAACAGACTCCAAGTCTGCTACCATCGACTACTCAGAGAGTAGTATCCTGTCACACACATCTCCATATTCTGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGTGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGACTGAAGTTAGTGAGATTGAGACTGAAGAGCTAGATATTCCTGATTTGAGTATGCTGAATGTGCCACACCCATCTGCTGTTGCTGCCAATGCTGCCAATGTTGCTGCTCCATCTGAGTTTGAATTTGATTGGTTTGCATTAGACAGTCTGGAGCATGGATTTGATGAAGAGCTTGGGTTTGATGATGATCTTGCTGCCTTGGAAGACATTCAGATATATGGGTTTGATGACGGTAAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAA 726 0.4504 MRKWGKWAAEIRDPFKGARVWLGTYNTAEEASQAYETKRLEFEAMAKALSDGRSNNNNTAVAASEKKNSNYYVSSAAESATDSKSATIDYSESSILSHTSPYSVLELDTSASNLTVSGKVSGNEVVETKGLETEVSEIETEELDIPDLSMLNVPHPSAVAANAANVAAPSEFEFDWFALDSLEHGFDEELGFDDDLAALEDIQIYGFDDGKPSELPDYDFDDIGADEFAGWIEEPLNIPCV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04045 241 SMART rav1_2 1 63 IPR001471 GO:0003700|GO:0006355
Vimu7g04045 241 Gene3D AP2/ERF domain 1 50 IPR036955 GO:0003700|GO:0006355
Vimu7g04045 241 CDD AP2 1 35 IPR001471 GO:0003700|GO:0006355
Vimu7g04045 241 ProSiteProfiles AP2/ERF domain profile. 1 57 IPR001471 GO:0003700|GO:0006355
Vimu7g04045 241 PANTHER DNA-BINDING DOMAIN 2 91 IPR044808 GO:0003700|GO:0009873
Vimu7g04045 241 Pfam AP2 domain 2 44 IPR001471 GO:0003700|GO:0006355
Vimu7g04045 241 SUPERFAMILY DNA-binding domain 2 42 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04045 Vimu-Chr7 38375181 38375981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04045 1 240 AP2-EREBP Transcription Factor Family AT1G68550 34.363 7.93e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g04045 AP2 2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04045 - - var:108335041 436.032